C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035105 Rpsa-201 ENSMUSG00000032518 10090 + 9:120127766-120132369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035105
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035105 174.054±91.69 439.719±170.89 56.566±0.32 62.710±30.83 602.990±275.09 567.830±151.96 126.575±104.22 161.361±87.41 184.386±98.26 283.208±128.82 95.378±56.03 526.037±360.72 126.027±108.97 39.253±35.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000146 CIL_000146_0002 CGP 9:120110374-120132369
CIL_00013R CIL_00013R_0002 CGP 9:120127766-120181484

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000028 IBA ribosomal small subunit assembly
GO:0000447 IBA endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000461 IBA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IBA structural constituent of ribosome
GO:0005055 IEA laminin receptor activity
GO:0005634 IDA nucleus
GO:0005737 ISS cytoplasm
GO:0005886 ISS plasma membrane
GO:0006407 IBA rRNA export from nucleus
GO:0006412 IBA translation
GO:0007155 IEA cell adhesion
GO:0015935 IDA small ribosomal subunit
GO:0016020 ISO membrane
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030686 IBA 90S preribosome
GO:0043236 IDA laminin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 704
ENST00000301821 RPSA-001 protein_coding Homo_sapiens 0 1210
ENST00000354585 RPSAP58-201 protein_coding Homo_sapiens 0 1147
ENST00000406712 RP3-334F4.1-001 processed_pseudogene Homo_sapiens 0 791
ENST00000412013 RPSAP63-001 processed_pseudogene Homo_sapiens 0 929
ENST00000412542 RP6-105D16.1-001 processed_pseudogene Homo_sapiens 0 976
ENST00000412645 AC016739.1-001 processed_pseudogene Homo_sapiens 0 725
ENST00000416648 RPSAP31-001 transcribed_processed_pseudogene Homo_sapiens 0 885
ENST00000416785 RPSAP2-001 processed_pseudogene Homo_sapiens 0 852
ENST00000418207 RPSAP9-001 processed_pseudogene Homo_sapiens 0 1051
ENST00000421048 RP4-635G19.1-001 processed_pseudogene Homo_sapiens 0 464
ENST00000427417 COMMD1-005 protein_coding Homo_sapiens 0 723
ENST00000428316 RP4-747G18.5-001 processed_pseudogene Homo_sapiens 0 976
ENST00000429143 RPSAP14-001 processed_pseudogene Homo_sapiens 0 411
ENST00000429844 RPSAP8-001 processed_pseudogene Homo_sapiens 0 976
ENST00000431241 RP11-556K13.1-001 processed_pseudogene Homo_sapiens 0 1051
ENST00000433498 RPSAP53-001 processed_pseudogene Homo_sapiens 0 869
ENST00000435879 RP11-254B13.1-001 processed_pseudogene Homo_sapiens 0 1046
ENST00000437188 AC074008.1-001 processed_pseudogene Homo_sapiens 0 763
ENST00000437336 RP11-350G8.3-001 processed_pseudogene Homo_sapiens 0 1022
ENST00000442699 AC018462.3-001 processed_pseudogene Homo_sapiens 0 902
ENST00000443003 RPSA-002 protein_coding Homo_sapiens 0 1123
ENST00000443010 AC097639.8-001 processed_pseudogene Homo_sapiens 0 961
ENST00000444166 COMMD1-008 protein_coding Homo_sapiens 0 784
ENST00000444599 RP11-366O20.5-001 processed_pseudogene Homo_sapiens 0 867
ENST00000445165 RPSAP31-002 processed_transcript Homo_sapiens 0 422
ENST00000445182 RP11-350G13.1-001 processed_pseudogene Homo_sapiens 0 972
ENST00000446095 RPSAP23-001 processed_pseudogene Homo_sapiens 0 675
ENST00000448168 RPSAP15-001 processed_pseudogene Homo_sapiens 0 1029
ENST00000454001 RPSAP54-001 processed_pseudogene Homo_sapiens 0 1075
ENST00000458337 COMMD1-006 protein_coding Homo_sapiens 0 787
ENST00000458478 RPSA-008 protein_coding Homo_sapiens 0 1048
ENST00000464073 RP11-187O7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 1050
ENST00000465940 RP11-58H15.1-001 transcribed_processed_pseudogene Homo_sapiens 0 813
ENST00000470913 RPSAP37-001 processed_pseudogene Homo_sapiens 0 405
ENST00000477347 RPSAP55-001 processed_pseudogene Homo_sapiens 0 915
ENST00000478027 RPSA-003 processed_transcript Homo_sapiens 0 918
ENST00000479228 RPSAP47-001 processed_pseudogene Homo_sapiens 0 1062
ENST00000483479 RP11-179A18.1-001 processed_pseudogene Homo_sapiens 0 922
ENST00000484897 RPSAP56-001 processed_pseudogene Homo_sapiens 0 974
ENST00000485258 RP11-600F24.1-001 processed_pseudogene Homo_sapiens 0 917
ENST00000488229 RPSAP4-001 processed_pseudogene Homo_sapiens 0 1007
ENST00000494591 RP11-58H15.1-002 processed_transcript Homo_sapiens 0 902
ENST00000495394 RPSA-004 retained_intron Homo_sapiens 0 340
ENST00000496398 RPSAP58-001 protein_coding Homo_sapiens 0 1190
ENST00000502477 RPSAP2-001 processed_pseudogene Homo_sapiens 0 852
ENST00000507015 RPSAP2-001 processed_pseudogene Homo_sapiens 0 846

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