C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily A, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032769 Trpa1 10090 - 1:14872648-14918862 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041447 Trpa1-001 14872648-14918862 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000041447
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000041447 0.008±0.00 0.065±0.04 0.020±0.01 0.040±0.01 0.373±0.12 0.023±0.00 0.008±0.00 0.005±0.00 0.017±0.00 0.051±0.01 0.025±0.01 0.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FQ CIL_0003FQ_0002 CGP 1:14753346-14918862
CIL_0005BY CIL_0005BY_0003 CGP 1:14872648-15723750

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IMP ion channel activity
GO:0005262 IDA calcium channel activity
GO:0006816 IDA calcium ion transport
GO:0009409 IDA response to cold
GO:0015267 IDA channel activity
GO:0016021 ISS integral component of membrane
GO:0032421 IDA stereocilium bundle
GO:0034220 IMP ion transmembrane transport
GO:0042493 IDA response to drug
GO:0042542 IMP response to hydrogen peroxide
GO:0048265 IMP response to pain
GO:0050955 IDA thermoception
GO:0050966 IMP detection of mechanical stimulus involved in sensory perception of pain
GO:0050968 IMP detection of chemical stimulus involved in sensory perception of pain
GO:0055085 IDA transmembrane transport
GO:0070588 IDA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016699 trpa1a transient receptor potential cation channel, subfamily A, member 1a protein_coding Danio_rerio
ENSDARG00000031875 trpa1b transient receptor potential cation channel, subfamily A, member 1b protein_coding Danio_rerio
ENSG00000104321 TRPA1 transient receptor potential cation channel, subfamily A, member 1 protein_coding Homo_sapiens

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