C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily A, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041447 Trpa1-001 ENSMUSG00000032769 10090 - 1:14872648-14918862 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000041447
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000041447 0.008±0.00 0.065±0.04 0.020±0.01 0.040±0.01 0.373±0.12 0.023±0.00 0.008±0.00 0.005±0.00 0.017±0.00 0.051±0.01 0.025±0.01 0.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FQ CIL_0003FQ_0002 CGP 1:14753346-14918862
CIL_0005BY CIL_0005BY_0003 CGP 1:14872648-15723750

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IMP ion channel activity
GO:0005262 IDA calcium channel activity
GO:0006816 IDA calcium ion transport
GO:0009409 IDA response to cold
GO:0015267 IDA channel activity
GO:0016021 ISS integral component of membrane
GO:0032421 IDA stereocilium bundle
GO:0034220 IMP ion transmembrane transport
GO:0042493 IDA response to drug
GO:0042542 IMP response to hydrogen peroxide
GO:0048265 IMP response to pain
GO:0050955 IDA thermoception
GO:0050966 IMP detection of mechanical stimulus involved in sensory perception of pain
GO:0050968 IMP detection of chemical stimulus involved in sensory perception of pain
GO:0055085 IDA transmembrane transport
GO:0070588 IDA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262209 TRPA1-001 protein_coding Homo_sapiens 0 2736
ENST00000503430 RP11-656G20.1-001 unprocessed_pseudogene Homo_sapiens 0 2043
ENST00000520788 TRPA1-004 retained_intron Homo_sapiens 0 267
ENST00000523582 TRPA1-002 protein_coding Homo_sapiens 0 2353

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