C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily C, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032839 Trpc1 10090 - 9:95705082-95750375 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053785 Trpc1-001 95706627-95750358 protein_coding
  ENSMUST00000186235 Trpc1-005 95721215-95732209 protein_coding
  ENSMUST00000188141 Trpc1-007 95715507-95718614 retained_intron
  ENSMUST00000189137 Trpc1-004 95705082-95750358 protein_coding
  ENSMUST00000190205 Trpc1-006 95749038-95750375 retained_intron
  ENSMUST00000190497 Trpc1-003 95706627-95750358 nonsense_mediated_decay
  ENSMUST00000190604 Trpc1-002 95706627-95750358 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053785ENSMUST00000188141ENSMUST00000189137ENSMUST00000190205ENSMUST00000190497ENSMUST00000190604
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053785 0.332±0.09 1.050±0.58 0.532±0.00 2.889±2.23 0.586±0.21 0.702±0.24 0.666±0.00 1.799±0.86 0.074±0.02 1.079±0.34 0.061±0.00 0.938±0.39 0.267±0.14 0.794±0.53
ENSMUST00000188141 N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A 0.238±0.00 N/A N/A
ENSMUST00000189137 0.569±0.06 0.299±0.13 0.444±0.20 1.137±0.13 0.703±0.47 0.350±0.08 0.594±0.18 4.101±1.73 0.189±0.12 1.465±0.60 0.123±0.05 0.558±0.18 0.098±0.01 0.872±0.30
ENSMUST00000190205 N/A 0.541±0.31 N/A N/A 0.182±0.00 0.721±0.40 N/A N/A 0.062±0.00 0.710±0.00 N/A 0.944±0.59 N/A N/A
ENSMUST00000190497 0.465±0.10 N/A N/A 2.194±0.00 0.298±0.02 0.634±0.00 N/A 1.977±0.00 0.055±0.00 0.601±0.00 N/A 1.059±0.00 N/A 0.285±0.00
ENSMUST00000190604 N/A 0.367±0.27 0.431±0.00 N/A 0.202±0.00 0.655±0.11 0.579±0.14 2.060±0.00 0.112±0.00 N/A N/A 0.934±0.36 0.047±0.00 0.475±0.15

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005261 IEA cation channel activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0015279 IMP store-operated calcium channel activity
GO:0016021 IEA integral component of membrane
GO:0016323 IMP basolateral plasma membrane
GO:0030017 IDA sarcomere
GO:0043034 IDA costamere
GO:0043234 IPI protein complex
GO:0043235 ISO receptor complex
GO:0044325 IEA ion channel binding
GO:0045121 IDA membrane raft
GO:0046541 IMP saliva secretion
GO:0051281 IEA positive regulation of release of sequestered calcium ion into cytosol
GO:0051480 IEA cytosolic calcium ion homeostasis
GO:0051592 IEA response to calcium ion
GO:0070588 IEA calcium ion transmembrane transport
GO:0070679 IEA inositol 1,4,5 trisphosphate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061203 trpc1 transient receptor potential cation channel, subfamily C, member 1 protein_coding Danio_rerio
ENSG00000144935 TRPC1 transient receptor potential cation channel, subfamily C, member 1 protein_coding Homo_sapiens

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