C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189137 Trpc1-004 ENSMUSG00000032839 10090 - 9:95705082-95750358 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000189137
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000189137 0.569±0.06 0.299±0.13 0.444±0.20 1.137±0.13 0.703±0.47 0.350±0.08 0.594±0.18 4.101±1.73 0.189±0.12 1.465±0.60 0.123±0.05 0.558±0.18 0.098±0.01 0.872±0.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005261 IEA cation channel activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0015279 IMP store-operated calcium channel activity
GO:0016021 IEA integral component of membrane
GO:0016323 IMP basolateral plasma membrane
GO:0030017 IDA sarcomere
GO:0043034 IDA costamere
GO:0043234 IPI protein complex
GO:0043235 ISO receptor complex
GO:0044325 IEA ion channel binding
GO:0045121 IDA membrane raft
GO:0046541 IMP saliva secretion
GO:0051281 IEA positive regulation of release of sequestered calcium ion into cytosol
GO:0051480 IEA cytosolic calcium ion homeostasis
GO:0051592 IEA response to calcium ion
GO:0070588 IEA calcium ion transmembrane transport
GO:0070679 IEA inositol 1,4,5 trisphosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273482 TRPC1-001 protein_coding Homo_sapiens 0 2750
ENST00000460401 TRPC1-004 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000476941 TRPC1-002 protein_coding Homo_sapiens 0 3834
ENST00000480101 TRPC1-005 retained_intron Homo_sapiens 0 580
ENST00000612385 TRPC1-201 protein_coding Homo_sapiens 0 2750

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