C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily C, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144935 TRPC1 9606 + 3:142724074-142807888 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273482 TRPC1-001 142724169-142807888 protein_coding
  ENST00000460401 TRPC1-004 142724565-142777658 nonsense_mediated_decay
  ENST00000476941 TRPC1-002 142724074-142806428 protein_coding
  ENST00000480101 TRPC1-005 142780940-142785287 retained_intron
  ENST00000612385 TRPC1-201 142724435-142807520 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273482ENST00000476941ENST00000480101ENST00000612385
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273482 0.809±0.00 1.130±0.00 2.211±0.48 0.560±0.00 0.862±0.35 1.545±0.00 1.271±0.00 0.577±0.52 0.461±0.31 0.200±0.00 2.377±0.33 0.291±0.06 1.460±0.05
ENST00000476941 N/A N/A 2.092±1.08 0.448±0.04 0.451±0.00 0.722±0.29 N/A 1.157±1.13 0.414±0.05 0.314±0.16 1.339±0.83 0.535±0.00 2.221±0.00
ENST00000480101 N/A N/A N/A N/A N/A N/A 0.240±0.00 4.370±0.00 N/A N/A N/A N/A N/A
ENST00000612385 0.639±0.00 N/A N/A 1.625±0.00 N/A N/A N/A N/A N/A N/A 0.166±0.00 N/A 0.507±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065B CIL_00065B_0002 CGP 3:142724074-142889203

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005261 EXP cation channel activity
GO:0005262 TAS calcium channel activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006811 IEA ion transport
GO:0006816 TAS calcium ion transport
GO:0007411 TAS axon guidance
GO:0015279 IEA store-operated calcium channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0030017 IEA sarcomere
GO:0034220 TAS ion transmembrane transport
GO:0043034 IEA costamere
GO:0043234 IEA protein complex
GO:0043235 IDA receptor complex
GO:0044325 IPI ion channel binding
GO:0045121 IEA membrane raft
GO:0046541 IEA saliva secretion
GO:0051281 IDA positive regulation of release of sequestered calcium ion into cytosol
GO:0051480 IDA cytosolic calcium ion homeostasis
GO:0051592 IDA response to calcium ion
GO:0055085 TAS:IEA transmembrane transport
GO:0070588 TAS calcium ion transmembrane transport
GO:0070679 IDA inositol 1,4,5 trisphosphate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061203 trpc1 transient receptor potential cation channel, subfamily C, member 1 protein_coding Danio_rerio
ENSMUSG00000032839 Trpc1 transient receptor potential cation channel, subfamily C, member 1 protein_coding Mus_musculus

Loading