C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin polymerizing factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079205 Chpf-001 ENSMUSG00000032997 10090 - 1:75474569-75479271 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079205
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079205 47.112±16.07 49.395±6.11 46.426±5.99 29.827±3.20 29.874±4.39 25.521±2.89 9.744±2.69 13.862±3.12 2.394±1.88 31.974±3.07 0.929±0.23 60.586±28.16 32.007±5.52 10.761±4.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_000414 CIL_000414_0003 CGP 1:75450436-75479307
CIL_00082R CIL_00082R_0002 VISTA 1:75469003-76073592

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005739 IEA mitochondrion
GO:0016021 IEA integral component of membrane
GO:0016757 IMP transferase activity, transferring glycosyl groups
GO:0030206 IMP chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0046872 IEA metal ion binding
GO:0047238 IEA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000035307 CHPF2-001 protein_coding Homo_sapiens 0.0000000000003 82
ENST00000243776 CHPF-001 protein_coding Homo_sapiens 0 2739
ENST00000373891 CHPF-002 protein_coding Homo_sapiens 0 1048
ENST00000495645 CHPF2-002 protein_coding Homo_sapiens 0.0000000000002 82
ENST00000535926 CHPF-201 protein_coding Homo_sapiens 0 2182

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