C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin polymerizing factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094818 Chpf-002 ENSMUSG00000032997 10090 - 1:75474575-75479307 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryTestisENSMUST00000094818
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000094818 17.233±4.02 3.572±0.28 5.925±2.95 5.861±1.02 2.521±0.76 0.367±0.32 6.605±2.69 0.213±0.00 13.378±5.14 2.781±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_000414 CIL_000414_0003 CGP 1:75450436-75479307
CIL_00082R CIL_00082R_0002 VISTA 1:75469003-76073592

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005739 IEA mitochondrion
GO:0016021 IEA integral component of membrane
GO:0016757 IMP transferase activity, transferring glycosyl groups
GO:0030206 IMP chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0046872 IEA metal ion binding
GO:0047238 IEA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000035307 CHPF2-001 protein_coding Homo_sapiens 0.0000000000003 82
ENST00000243776 CHPF-001 protein_coding Homo_sapiens 0 2182
ENST00000373891 CHPF-002 protein_coding Homo_sapiens 0 573
ENST00000495645 CHPF2-002 protein_coding Homo_sapiens 0.0000000000002 82
ENST00000535926 CHPF-201 protein_coding Homo_sapiens 0 2182

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