C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin polymerizing factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138683 Chpf-003 ENSMUSG00000032997 10090 - 1:75474576-75479119 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastLiverMuscleTestisENSMUST00000138683
Transcript ID Adipose Adrenal Breast Liver Muscle Testis
ENSMUST00000138683 5.028±0.00 8.877±0.80 5.496±0.00 0.452±0.02 0.331±0.14 3.530±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_000414 CIL_000414_0003 CGP 1:75450436-75479307
CIL_00082R CIL_00082R_0002 VISTA 1:75469003-76073592

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0016757 IMP transferase activity, transferring glycosyl groups
GO:0030206 IMP chondroitin sulfate biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000035307 CHPF2-001 protein_coding Homo_sapiens 0.0000000000003 82
ENST00000243776 CHPF-001 protein_coding Homo_sapiens 0 1905
ENST00000373891 CHPF-002 protein_coding Homo_sapiens 0 451
ENST00000495645 CHPF2-002 protein_coding Homo_sapiens 0.0000000000002 82
ENST00000535926 CHPF-201 protein_coding Homo_sapiens 0 1905

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