C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GDP-mannose pyrophosphorylase A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033021 Gmppa 10090 + 1:75435930-75443179 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037796 Gmppa-001 75435930-75443174 protein_coding
  ENSMUST00000113584 Gmppa-002 75435943-75443173 protein_coding
  ENSMUST00000124539 Gmppa-011 75442224-75443179 retained_intron
  ENSMUST00000131545 Gmppa-008 75436087-75441524 protein_coding
  ENSMUST00000132291 Gmppa-009 75441620-75442932 retained_intron
  ENSMUST00000133418 Gmppa-005 75435968-75441515 protein_coding
  ENSMUST00000135453 Gmppa-010 75442166-75443173 retained_intron
  ENSMUST00000140287 Gmppa-007 75435984-75439399 protein_coding
  ENSMUST00000141124 Gmppa-004 75436113-75438328 protein_coding
  ENSMUST00000143730 Gmppa-006 75435967-75440512 protein_coding
  ENSMUST00000144874 Gmppa-012 75435982-75441609 protein_coding
  ENSMUST00000145166 Gmppa-003 75435961-75438873 protein_coding
  ENSMUST00000188097 Gmppa-013 75436942-75442028 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037796ENSMUST00000113584ENSMUST00000135453ENSMUST00000144874ENSMUST00000188097
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037796 11.490±2.79 10.666±1.61 21.213±6.37 13.979±3.48 15.035±5.95 19.037±4.44 7.096±1.37 12.737±1.16 12.685±6.83 10.491±3.77 9.756±1.93 10.452±2.58 15.301±1.33 9.407±6.10
ENSMUST00000113584 5.536±0.00 9.924±1.99 9.418±0.00 8.891±0.90 9.350±1.28 N/A 6.897±1.74 5.555±0.15 4.478±0.79 5.544±0.00 4.952±1.44 13.033±5.18 15.089±7.21 8.857±5.15
ENSMUST00000135453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.773±0.00 N/A
ENSMUST00000144874 16.562±0.00 27.012±3.87 N/A 8.807±0.00 22.532±5.20 N/A N/A N/A N/A 17.638±0.00 N/A 24.432±0.00 16.883±7.43 10.215±5.96
ENSMUST00000188097 N/A 19.307±0.48 N/A N/A N/A 29.080±7.25 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006O1 CIL_0006O1_0002 CGP 1:75375297-75443179
CIL_000415 CIL_000415_0003 CGP 1:75435930-75474343

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0009058 IEA biosynthetic process
GO:0016779 IEA nucleotidyltransferase activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023498 gmppab GDP-mannose pyrophosphorylase Ab protein_coding Danio_rerio
ENSDARG00000024112 gmppaa GDP-mannose pyrophosphorylase Aa protein_coding Danio_rerio
ENSG00000144591 GMPPA GDP-mannose pyrophosphorylase A protein_coding Homo_sapiens

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