C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GDP-mannose pyrophosphorylase A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144591 GMPPA 9606 + 2:219498867-219506988 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313597 GMPPA-001 219498867-219506987 protein_coding
  ENST00000341142 GMPPA-012 219498915-219506987 protein_coding
  ENST00000358215 GMPPA-003 219498901-219506988 protein_coding
  ENST00000373908 GMPPA-004 219498906-219506988 protein_coding
  ENST00000373917 GMPPA-002 219498888-219506935 protein_coding
  ENST00000435316 GMPPA-008 219498909-219505555 protein_coding
  ENST00000443704 GMPPA-005 219498905-219506933 nonsense_mediated_decay
  ENST00000455657 GMPPA-006 219498907-219504132 protein_coding
  ENST00000480034 GMPPA-011 219505725-219506694 retained_intron
  ENST00000480506 GMPPA-009 219498884-219502441 retained_intron
  ENST00000481170 GMPPA-013 219499775-219506987 retained_intron
  ENST00000496536 GMPPA-010 219505940-219506422 retained_intron
  ENST00000622191 GMPPA-201 219499955-219506988 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313597ENST00000358215ENST00000373908ENST00000373917ENST00000435316ENST00000443704ENST00000455657ENST00000480506ENST00000481170ENST00000622191
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313597 4.082±0.00 9.006±0.00 N/A 2.515±1.48 5.828±0.00 2.136±0.00 0.213±0.00 16.761±0.00 9.243±0.00 N/A 3.741±3.60 10.369±0.00 7.068±0.00 5.852±0.00
ENST00000358215 2.560±0.00 N/A N/A 1.142±0.00 2.783±0.00 3.408±0.00 1.724±0.00 N/A N/A N/A N/A 4.604±1.32 2.324±0.00 3.771±0.00
ENST00000373908 1.924±0.00 N/A N/A 0.931±0.00 2.475±0.00 1.962±0.00 N/A 15.663±0.00 0.689±0.00 N/A N/A 5.156±0.00 N/A 3.039±0.00
ENST00000373917 N/A N/A N/A N/A 0.611±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435316 N/A N/A 3.375±0.00 N/A N/A N/A N/A 0.774±0.00 1.369±0.00 2.755±0.00 N/A 8.685±4.40 6.488±0.00 N/A
ENST00000443704 1.663±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.448±0.00 N/A N/A
ENST00000455657 N/A N/A N/A N/A N/A N/A N/A N/A 0.609±0.00 N/A N/A 1.242±0.00 N/A N/A
ENST00000480506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.466±0.00 N/A N/A N/A
ENST00000481170 0.387±0.00 N/A 0.118±0.00 0.419±0.00 0.474±0.00 0.401±0.20 N/A N/A 0.064±0.00 0.226±0.00 N/A 0.925±0.04 N/A N/A
ENST00000622191 N/A N/A 0.813±0.00 0.954±0.00 1.555±0.00 1.789±0.00 4.797±0.00 1.591±0.00 31.864±0.00 4.597±3.99 10.238±0.00 7.472±6.62 21.475±13.24 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006O1 CIL_0006O1_0001 CGP 2:219434846-219506988
CIL_000415 CIL_000415_0002 CGP 2:219498867-219538772

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006488 TAS dolichol-linked oligosaccharide biosynthetic process
GO:0009058 IEA biosynthetic process
GO:0009298 TAS GDP-mannose biosynthetic process
GO:0016779 IEA nucleotidyltransferase activity
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023498 gmppab GDP-mannose pyrophosphorylase Ab protein_coding Danio_rerio
ENSDARG00000024112 gmppaa GDP-mannose pyrophosphorylase Aa protein_coding Danio_rerio
ENSMUSG00000033021 Gmppa GDP-mannose pyrophosphorylase A protein_coding Mus_musculus

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