C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDP-mannose pyrophosphorylase A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037796 Gmppa-001 ENSMUSG00000033021 10090 + 1:75435930-75443174 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037796 11.490±2.79 10.666±1.61 21.213±6.37 13.979±3.48 15.035±5.95 19.037±4.44 7.096±1.37 12.737±1.16 12.685±6.83 10.491±3.77 9.756±1.93 10.452±2.58 15.301±1.33 9.407±6.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006O1 CIL_0006O1_0002 CGP 1:75375297-75443179
CIL_000415 CIL_000415_0003 CGP 1:75435930-75474343

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0009058 IEA biosynthetic process
GO:0016779 IEA nucleotidyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313597 GMPPA-001 protein_coding Homo_sapiens 0 1698
ENST00000341142 GMPPA-012 protein_coding Homo_sapiens 0 1624
ENST00000358215 GMPPA-003 protein_coding Homo_sapiens 0 1624
ENST00000373908 GMPPA-004 protein_coding Homo_sapiens 0 1646
ENST00000373917 GMPPA-002 protein_coding Homo_sapiens 0 1144
ENST00000435316 GMPPA-008 protein_coding Homo_sapiens 0 957
ENST00000443704 GMPPA-005 nonsense_mediated_decay Homo_sapiens 0 1537
ENST00000455657 GMPPA-006 protein_coding Homo_sapiens 0 747
ENST00000480506 GMPPA-009 retained_intron Homo_sapiens 0 399
ENST00000481170 GMPPA-013 retained_intron Homo_sapiens 0 514
ENST00000622191 GMPPA-201 protein_coding Homo_sapiens 0 1620

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