C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TRIO and F-actin binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033088 Triobp 10090 + 15:78947724-79005867 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000109687 Triobp-005 78983041-79005864 protein_coding
  ENSMUST00000109688 Triobp-201 78983056-79005862 protein_coding
  ENSMUST00000109689 Triobp-002 78947724-79005867 protein_coding
  ENSMUST00000109690 Triobp-001 78947724-79005565 protein_coding
  ENSMUST00000129922 Triobp-008 79002182-79004697 processed_transcript
  ENSMUST00000130663 Triobp-007 78983077-78994859 protein_coding
  ENSMUST00000137934 Triobp-004 78948245-78953255 retained_intron
  ENSMUST00000140228 Triobp-003 78947724-78968842 processed_transcript
  ENSMUST00000144151 Triobp-006 78983705-78991438 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109687ENSMUST00000109688ENSMUST00000109689ENSMUST00000109690ENSMUST00000129922
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109687 12.544±4.59 N/A 4.808±0.86 N/A 22.751±6.47 10.373±0.92 4.199±0.00 5.392±0.00 3.767±2.07 8.701±1.12 N/A 31.371±0.00 5.609±0.00 N/A
ENSMUST00000109688 26.519±7.82 54.794±5.29 18.730±0.09 8.000±4.85 23.906±11.93 26.160±5.27 8.425±1.35 18.166±2.97 11.672±4.07 15.910±1.91 9.339±1.33 37.311±16.67 32.656±9.70 9.187±3.86
ENSMUST00000109689 N/A N/A N/A 2.749±1.79 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109690 N/A N/A N/A 4.239±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129922 N/A N/A N/A 5.399±0.00 N/A N/A N/A N/A N/A N/A N/A 70.366±0.00 88.036±1.79 15.745±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_00040B CIL_00040B_0002 CGP 15:78934933-79005867
CIL_0001D1 CIL_0001D1_0002 CGP 15:78947724-79030498

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0007067 IEA mitotic nuclear division
GO:0015629 IEA actin cytoskeleton
GO:0031625 IEA ubiquitin protein ligase binding
GO:0051015 IEA actin filament binding
GO:1900026 IDA positive regulation of substrate adhesion-dependent cell spreading

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006385 triobp TRIO and F-actin binding protein protein_coding Danio_rerio
ENSDARG00000075870 TRIOBP (2 of 2) TRIO and F-actin binding protein protein_coding Danio_rerio
ENSG00000100106 TRIOBP TRIO and F-actin binding protein protein_coding Homo_sapiens

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