C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRIO and F-actin binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109687 Triobp-005 ENSMUSG00000033088 10090 + 15:78983041-79005864 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000109687
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000109687 12.544±4.59 4.808±0.86 22.751±6.47 10.373±0.92 4.199±0.00 5.392±0.00 3.767±2.07 8.701±1.12 31.371±0.00 5.609±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_00040B CIL_00040B_0002 CGP 15:78934933-79005867
CIL_0001D1 CIL_0001D1_0002 CGP 15:78947724-79030498

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0007067 IEA mitotic nuclear division
GO:1900026 IDA positive regulation of substrate adhesion-dependent cell spreading

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344404 TRIOBP-002 nonsense_mediated_decay Homo_sapiens 0 1923
ENST00000403663 TRIOBP-006 protein_coding Homo_sapiens 0 2010
ENST00000406386 TRIOBP-001 protein_coding Homo_sapiens 0 2010
ENST00000407319 TRIOBP-005 protein_coding Homo_sapiens 0 876
ENST00000413051 TRIOBP-009 nonsense_mediated_decay Homo_sapiens 0 586
ENST00000417857 TRIOBP-010 protein_coding Homo_sapiens 0 697
ENST00000418339 TRIOBP-008 protein_coding Homo_sapiens 0 614
ENST00000428075 TRIOBP-012 protein_coding Homo_sapiens 0 656
ENST00000452519 TRIOBP-011 protein_coding Homo_sapiens 0 250
ENST00000455236 RP1-37E16.12-001 nonsense_mediated_decay Homo_sapiens 0 2080

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