C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033295 Ptprf 10090 - 4:118208213-118291405 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049074 Ptprf-001 118208213-118291405 protein_coding
  ENSMUST00000123484 Ptprf-004 118208989-118217680 processed_transcript
  ENSMUST00000124758 Ptprf-003 118209010-118236016 protein_coding
  ENSMUST00000127616 Ptprf-006 118209860-118210741 processed_transcript
  ENSMUST00000143348 Ptprf-005 118226158-118231100 processed_transcript
  ENSMUST00000150096 Ptprf-002 118209005-118236445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049074ENSMUST00000124758ENSMUST00000150096
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049074 10.574±6.34 9.853±0.75 27.910±0.20 8.714±7.63 12.037±5.65 46.199±11.09 1.528±0.24 31.073±4.04 17.341±14.13 77.934±7.95 0.266±0.13 32.983±11.43 14.584±7.75 3.812±1.72
ENSMUST00000124758 N/A N/A N/A N/A N/A N/A 0.386±0.09 8.713±0.95 7.353±0.70 N/A 0.105±0.00 N/A 1.709±0.00 0.633±0.00
ENSMUST00000150096 N/A 3.777±0.45 N/A 11.877±8.37 5.770±0.56 21.252±6.33 0.437±0.00 N/A N/A 17.611±0.00 0.277±0.00 10.748±1.44 5.831±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004725 ISS protein tyrosine phosphatase activity
GO:0007155 IEA cell adhesion
GO:0008201 IEA heparin binding
GO:0016021 IEA integral component of membrane
GO:0016477 ISS cell migration
GO:0032403 IDA protein complex binding
GO:0035335 ISS peptidyl-tyrosine dephosphorylation
GO:0070062 IEA extracellular vesicular exosome
GO:1900121 ISS negative regulation of receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005754 ptprfb protein tyrosine phosphatase, receptor type, f, b protein_coding Danio_rerio
ENSDARG00000076810 ptprfa protein tyrosine phosphatase, receptor type, f, a protein_coding Danio_rerio
ENSG00000142949 PTPRF protein tyrosine phosphatase, receptor type, F protein_coding Homo_sapiens

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