C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049074 Ptprf-001 ENSMUSG00000033295 10090 - 4:118208213-118291405 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049074
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049074 10.574±6.34 9.853±0.75 27.910±0.20 8.714±7.63 12.037±5.65 46.199±11.09 1.528±0.24 31.073±4.04 17.341±14.13 77.934±7.95 0.266±0.13 32.983±11.43 14.584±7.75 3.812±1.72

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 ISS protein tyrosine phosphatase activity
GO:0007155 IEA cell adhesion
GO:0008201 IEA heparin binding
GO:0016021 IEA integral component of membrane
GO:0016477 ISS cell migration
GO:0032403 IDA protein complex binding
GO:0035335 ISS peptidyl-tyrosine dephosphorylation
GO:0070062 IEA extracellular vesicular exosome
GO:1900121 ISS negative regulation of receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000083314 ptprfb-001 protein_coding Danio_rerio 0 1496
ENST00000359947 PTPRF-001 protein_coding Homo_sapiens 0 8510
ENST00000372405 PTPRF-004 processed_transcript Homo_sapiens 0 965
ENST00000372407 PTPRF-005 protein_coding Homo_sapiens 0 3672
ENST00000412568 PTPRF-014 protein_coding Homo_sapiens 0 2639
ENST00000414879 PTPRF-006 protein_coding Homo_sapiens 0 2937
ENST00000429895 PTPRF-015 protein_coding Homo_sapiens 0 7053
ENST00000436724 PTPRF-003 processed_transcript Homo_sapiens 0 1013
ENST00000437607 PTPRF-013 protein_coding Homo_sapiens 0 839
ENST00000438120 PTPRF-002 protein_coding Homo_sapiens 0 7618
ENST00000463041 PTPRF-012 processed_transcript Homo_sapiens 0 278
ENST00000467464 PTPRF-011 processed_transcript Homo_sapiens 0 494
ENST00000477970 PTPRF-007 processed_transcript Homo_sapiens 0 1701
ENST00000496447 PTPRF-008 processed_transcript Homo_sapiens 0 5751
ENST00000617451 PTPRF-201 protein_coding Homo_sapiens 0 1092

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