C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA methyltransferase 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033439 Trmt13 10090 - 3:116581093-116614587 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041524 Trmt13-001 116581093-116614587 protein_coding
  ENSMUST00000124807 Trmt13-006 116591988-116594801 retained_intron
  ENSMUST00000126546 Trmt13-005 116595394-116614121 processed_transcript
  ENSMUST00000134761 Trmt13-007 116589568-116594668 nonsense_mediated_decay
  ENSMUST00000156161 Trmt13-002 116584124-116594887 retained_intron
  ENSMUST00000183638 Trmt13-003 116581095-116594860 nonsense_mediated_decay
  ENSMUST00000184963 Trmt13-004 116581094-116594836 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000156161ENSMUST00000183638ENSMUST00000184963
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000156161 3.146±0.55 2.000±0.60 2.314±0.34 3.728±0.24 3.104±0.42 1.991±0.45 N/A 0.863±0.39 2.296±1.09 2.555±0.46 N/A 2.084±0.52 2.278±0.14 N/A
ENSMUST00000183638 3.029±0.00 0.793±0.00 3.191±0.22 3.789±0.73 4.463±2.69 1.073±0.00 10.827±1.03 0.606±0.02 2.619±2.06 1.486±0.00 5.180±0.17 2.996±1.55 3.447±0.82 5.998±0.00
ENSMUST00000184963 N/A N/A 2.258±0.57 2.714±0.00 N/A N/A N/A N/A N/A N/A N/A 3.046±0.13 2.701±0.87 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EW CIL_0007EW_0002 CGP 3:116513070-116583134
CIL_0006G0 CIL_0006G0_0002 CGP 3:116562973-116614587

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008033 IEA tRNA processing
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042701 trmt13 tRNA methyltransferase 13 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000122435 TRMT13 tRNA methyltransferase 13 homolog (S. cerevisiae) protein_coding Homo_sapiens

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