C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183638 Trmt13-003 ENSMUSG00000033439 10090 - 3:116581095-116594860 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000183638
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000183638 3.029±0.00 0.793±0.00 3.191±0.22 3.789±0.73 4.463±2.69 1.073±0.00 10.827±1.03 0.606±0.02 2.619±2.06 1.486±0.00 5.180±0.17 2.996±1.55 3.447±0.82 5.998±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EW CIL_0007EW_0002 CGP 3:116513070-116583134
CIL_0006G0 CIL_0006G0_0002 CGP 3:116562973-116614587

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370139 TRMT13-005 protein_coding Homo_sapiens 0 429
ENST00000370141 TRMT13-001 protein_coding Homo_sapiens 0 896
ENST00000370143 TRMT13-003 protein_coding Homo_sapiens 0 318
ENST00000482437 TRMT13-002 nonsense_mediated_decay Homo_sapiens 0 549

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