C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high density lipoprotein (HDL) binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034088 Hdlbp 10090 - 1:93405940-93478815 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042498 Hdlbp-003 93407762-93445686 protein_coding
  ENSMUST00000170883 Hdlbp-001 93405940-93478801 protein_coding
  ENSMUST00000185349 Hdlbp-009 93440298-93445649 retained_intron
  ENSMUST00000186164 Hdlbp-004 93408002-93440792 protein_coding
  ENSMUST00000186787 Hdlbp-008 93437119-93445432 protein_coding
  ENSMUST00000188165 Hdlbp-005 93440688-93478377 protein_coding
  ENSMUST00000188844 Hdlbp-011 93475173-93478380 retained_intron
  ENSMUST00000188988 Hdlbp-010 93431435-93440961 protein_coding
  ENSMUST00000189025 Hdlbp-006 93437155-93478815 protein_coding
  ENSMUST00000189951 Hdlbp-002 93428569-93445652 retained_intron
  ENSMUST00000190321 Hdlbp-007 93431018-93445682 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042498ENSMUST00000170883ENSMUST00000186164ENSMUST00000190321
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042498 30.104±5.05 18.670±1.90 35.502±5.45 N/A 21.745±4.10 35.694±9.16 17.588±3.81 18.193±8.89 26.939±8.37 15.229±2.40 17.186±2.17 30.747±9.56 77.603±20.81 52.548±0.00
ENSMUST00000170883 13.007±3.96 N/A 34.908±16.47 22.304±3.97 9.816±9.36 10.194±0.00 32.436±7.31 13.848±3.13 18.723±7.56 6.684±1.50 37.568±1.61 21.385±21.36 39.794±11.68 51.537±14.81
ENSMUST00000186164 N/A N/A N/A 18.777±0.00 N/A N/A N/A N/A N/A N/A N/A 41.286±9.55 45.276±18.65 N/A
ENSMUST00000190321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 242.921±0.00 447.193±138.34 253.963±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000473 CIL_000473_0002 CGP 1:93373930-93478815
CIL_0002JH CIL_0002JH_0002 CGP 1:93405940-93510260

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006869 IEA lipid transport
GO:0008150 ND biological_process
GO:0008203 IEA cholesterol metabolic process
GO:0034364 IEA high-density lipoprotein particle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009830 hdlbpa high density lipoprotein-binding protein a protein_coding Danio_rerio
ENSG00000115677 HDLBP high density lipoprotein binding protein protein_coding Homo_sapiens

Loading