C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high density lipoprotein (HDL) binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042498 Hdlbp-003 ENSMUSG00000034088 10090 - 1:93407762-93445686 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042498
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042498 30.104±5.05 18.670±1.90 35.502±5.45 21.745±4.10 35.694±9.16 17.588±3.81 18.193±8.89 26.939±8.37 15.229±2.40 17.186±2.17 30.747±9.56 77.603±20.81 52.548±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000473 CIL_000473_0002 CGP 1:93373930-93478815
CIL_0002JH CIL_0002JH_0002 CGP 1:93405940-93510260

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006869 IEA lipid transport
GO:0008150 ND biological_process
GO:0008203 IEA cholesterol metabolic process
GO:0034364 IEA high-density lipoprotein particle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011863 hdlbpa-001 protein_coding Danio_rerio 0 1629
ENSDART00000055771 hdlbpa-201 protein_coding Danio_rerio 0 1546
ENSDART00000128279 hdlbpb-201 protein_coding Danio_rerio 0 743
ENSDART00000153055 hdlbpb-001 protein_coding Danio_rerio 0 743
ENST00000310931 HDLBP-003 protein_coding Homo_sapiens 0 5147
ENST00000373292 HDLBP-004 protein_coding Homo_sapiens 0 2684
ENST00000391975 HDLBP-001 protein_coding Homo_sapiens 0 5221
ENST00000391976 HDLBP-002 protein_coding Homo_sapiens 0 5147
ENST00000413241 HDLBP-012 protein_coding Homo_sapiens 0 375
ENST00000417540 HDLBP-009 protein_coding Homo_sapiens 0 189
ENST00000420451 HDLBP-016 protein_coding Homo_sapiens 0 320
ENST00000422080 HDLBP-029 protein_coding Homo_sapiens 0 359
ENST00000422933 HDLBP-031 protein_coding Homo_sapiens 0 1066
ENST00000423693 HDLBP-013 protein_coding Homo_sapiens 0 460
ENST00000425989 HDLBP-006 protein_coding Homo_sapiens 0 453
ENST00000426343 HDLBP-024 protein_coding Homo_sapiens 0 442
ENST00000427007 HDLBP-028 protein_coding Homo_sapiens 0 211
ENST00000427183 HDLBP-201 protein_coding Homo_sapiens 0 3565
ENST00000427487 HDLBP-044 protein_coding Homo_sapiens 0 665
ENST00000428482 HDLBP-015 protein_coding Homo_sapiens 0 1055
ENST00000430918 HDLBP-019 protein_coding Homo_sapiens 0 695
ENST00000441124 HDLBP-011 protein_coding Homo_sapiens 0 643
ENST00000442714 HDLBP-020 protein_coding Homo_sapiens 0 529
ENST00000442730 HDLBP-062 protein_coding Homo_sapiens 0 374
ENST00000444092 HDLBP-025 protein_coding Homo_sapiens 0 723
ENST00000449504 HDLBP-022 protein_coding Homo_sapiens 0 200
ENST00000449864 HDLBP-021 protein_coding Homo_sapiens 0 302
ENST00000452065 HDLBP-027 protein_coding Homo_sapiens 0 791
ENST00000452931 HDLBP-042 protein_coding Homo_sapiens 0 1014
ENST00000453141 HDLBP-033 protein_coding Homo_sapiens 0 780
ENST00000458564 HDLBP-030 protein_coding Homo_sapiens 0 329
ENST00000459788 HDLBP-046 retained_intron Homo_sapiens 0 536
ENST00000460826 HDLBP-057 retained_intron Homo_sapiens 0 346
ENST00000467435 HDLBP-037 retained_intron Homo_sapiens 0 320
ENST00000470482 HDLBP-052 processed_transcript Homo_sapiens 0 647
ENST00000470710 HDLBP-034 retained_intron Homo_sapiens 0 713
ENST00000471294 HDLBP-045 processed_transcript Homo_sapiens 0 422
ENST00000476807 HDLBP-040 processed_transcript Homo_sapiens 0 335
ENST00000477477 HDLBP-038 processed_transcript Homo_sapiens 0 255
ENST00000479169 HDLBP-047 retained_intron Homo_sapiens 0 797
ENST00000479894 HDLBP-050 retained_intron Homo_sapiens 0 211
ENST00000483086 HDLBP-049 processed_transcript Homo_sapiens 0 510
ENST00000484412 HDLBP-055 processed_transcript Homo_sapiens 0 449
ENST00000487169 HDLBP-005 retained_intron Homo_sapiens 0 2026
ENST00000488013 HDLBP-053 retained_intron Homo_sapiens 0 320
ENST00000488923 HDLBP-043 retained_intron Homo_sapiens 0 309
ENST00000494862 HDLBP-063 retained_intron Homo_sapiens 0 431
ENST00000498595 HDLBP-039 retained_intron Homo_sapiens 0 344

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