C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high density lipoprotein binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115677 HDLBP 9606 - 2:241227264-241317061 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310931 HDLBP-003 241229212-241315842 protein_coding
  ENST00000373292 HDLBP-004 241229224-241262792 protein_coding
  ENST00000391975 HDLBP-001 241227264-241272886 protein_coding
  ENST00000391976 HDLBP-002 241229212-241315292 protein_coding
  ENST00000413241 HDLBP-012 241262916-241315672 protein_coding
  ENST00000417540 HDLBP-009 241266827-241315702 protein_coding
  ENST00000420451 HDLBP-016 241264475-241315702 protein_coding
  ENST00000422080 HDLBP-029 241264521-241272833 protein_coding
  ENST00000422933 HDLBP-031 241256383-241268694 protein_coding
  ENST00000423693 HDLBP-013 241262917-241315672 protein_coding
  ENST00000425989 HDLBP-006 241262924-241317061 protein_coding
  ENST00000426343 HDLBP-024 241262871-241272831 protein_coding
  ENST00000427007 HDLBP-028 241266812-241272812 protein_coding
  ENST00000427183 HDLBP-201 241227267-241272831 protein_coding
  ENST00000427487 HDLBP-044 241238679-241246864 protein_coding
  ENST00000428482 HDLBP-015 241256394-241315675 protein_coding
  ENST00000430918 HDLBP-019 241262736-241302724 protein_coding
  ENST00000441124 HDLBP-011 241262782-241315203 protein_coding
  ENST00000442714 HDLBP-020 241256714-241273117 protein_coding
  ENST00000442730 HDLBP-062 241229462-241230824 protein_coding
  ENST00000444092 HDLBP-025 241262720-241271971 protein_coding
  ENST00000449504 HDLBP-022 241266818-241272834 protein_coding
  ENST00000449864 HDLBP-021 241264449-241272863 protein_coding
  ENST00000452065 HDLBP-027 241256765-241272820 protein_coding
  ENST00000452931 HDLBP-042 241240018-241249396 protein_coding
  ENST00000453141 HDLBP-033 241252965-241262862 protein_coding
  ENST00000458564 HDLBP-030 241264542-241272813 protein_coding
  ENST00000459788 HDLBP-046 241239811-241242790 retained_intron
  ENST00000460826 HDLBP-057 241246570-241248043 retained_intron
  ENST00000462130 HDLBP-008 241266866-241315726 processed_transcript
  ENST00000467435 HDLBP-037 241253000-241255548 retained_intron
  ENST00000470482 HDLBP-052 241230775-241236664 processed_transcript
  ENST00000470710 HDLBP-034 241255328-241256708 retained_intron
  ENST00000471294 HDLBP-045 241239992-241243688 processed_transcript
  ENST00000476807 HDLBP-040 241248249-241250996 processed_transcript
  ENST00000477477 HDLBP-038 241248329-241255445 processed_transcript
  ENST00000479169 HDLBP-047 241238293-241242540 retained_intron
  ENST00000479894 HDLBP-050 241235185-241236771 retained_intron
  ENST00000483086 HDLBP-049 241235205-241239736 processed_transcript
  ENST00000484412 HDLBP-055 241229439-241230848 processed_transcript
  ENST00000487169 HDLBP-005 241229224-241250937 retained_intron
  ENST00000488013 HDLBP-053 241230204-241231343 retained_intron
  ENST00000488923 HDLBP-043 241246664-241247417 retained_intron
  ENST00000490697 HDLBP-023 241268499-241272831 processed_transcript
  ENST00000494862 HDLBP-063 241229483-241229983 retained_intron
  ENST00000496569 HDLBP-007 241269173-241315820 processed_transcript
  ENST00000498595 HDLBP-039 241248244-241255400 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310931ENST00000373292ENST00000391975ENST00000391976ENST00000470482ENST00000488923
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310931 N/A N/A N/A N/A N/A 12.627±0.00 10.510±0.00 15.797±0.00 N/A 12.084±0.00 35.689±13.51 48.472±5.52 69.635±0.00 91.521±12.45
ENST00000373292 N/A N/A 16.721±0.00 12.234±0.00 23.326±0.00 45.312±21.84 20.102±8.82 32.163±0.00 19.405±0.00 20.994±0.00 47.131±32.03 N/A N/A 80.744±0.00
ENST00000391975 N/A N/A N/A 15.030±8.30 N/A N/A 14.953±0.00 N/A N/A N/A 18.896±11.81 31.851±6.29 N/A 42.417±0.00
ENST00000391976 86.594±0.00 44.582±0.00 15.940±0.00 9.885±0.00 60.760±38.16 38.651±18.50 35.900±20.76 36.562±18.91 32.593±14.64 52.214±37.16 38.671±25.13 64.381±28.87 105.437±3.75 N/A
ENST00000470482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 364.220±0.00 457.578±0.00 518.529±0.00
ENST00000488923 N/A N/A 93.409±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000473 CIL_000473_0001 CGP 2:241188509-241317061
CIL_0002JH CIL_0002JH_0001 CGP 2:241227264-241354027

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 TAS plasma membrane
GO:0006869 IEA lipid transport
GO:0008203 IEA cholesterol metabolic process
GO:0008289 TAS lipid binding
GO:0034364 IEA high-density lipoprotein particle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009830 hdlbpa high density lipoprotein-binding protein a protein_coding Danio_rerio
ENSMUSG00000034088 Hdlbp high density lipoprotein (HDL) binding protein protein_coding Mus_musculus

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