C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine-rich splicing factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034120 Srsf2 10090 - 11:116849901-116853094 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000092404 Srsf2-001 116849901-116853094 protein_coding
  ENSMUST00000136914 Srsf2-002 116850044-116853072 nonsense_mediated_decay
  ENSMUST00000138484 Srsf2-004 116849904-116852219 retained_intron
  ENSMUST00000176834 Srsf2-003 116849906-116852086 nonsense_mediated_decay
  ENSMUST00000177429 Srsf2-005 116850108-116851571 processed_transcript
  ENSMUST00000190993 Srsf2-201 116850054-116853072 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092404ENSMUST00000138484ENSMUST00000190993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092404 65.158±14.46 177.352±82.36 135.382±32.38 148.745±101.44 123.327±95.80 245.222±65.97 40.105±3.87 46.571±7.16 137.962±102.71 138.774±35.16 33.753±1.85 207.157±137.00 101.425±60.10 66.360±7.41
ENSMUST00000138484 N/A N/A 80.758±16.88 53.211±29.42 31.882±0.00 N/A N/A N/A 61.743±6.30 N/A 19.482±0.92 53.629±13.04 39.599±12.26 3.883±0.00
ENSMUST00000190993 139.924±37.25 323.864±142.37 N/A N/A 180.248±73.57 125.186±10.39 46.645±16.73 67.703±25.32 35.351±12.99 92.675±26.30 N/A 79.223±14.42 N/A 62.193±6.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KF CIL_0003KF_0003 CGP 11:116837432-116854263
CIL_0003KE CIL_0003KE_0003 CGP 11:116843278-116854263
CIL_0003U9 CIL_0003U9_0003 CGP 11:116849901-116875635

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005681 IDA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010906 srsf2b serine/arginine-rich splicing factor 2b protein_coding Danio_rerio
ENSDARG00000057484 srsf2a serine/arginine-rich splicing factor 2a protein_coding Danio_rerio
ENSG00000161547 SRSF2 serine/arginine-rich splicing factor 2 protein_coding Homo_sapiens

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