C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138484 Srsf2-004 ENSMUSG00000034120 10090 - 11:116849904-116852219 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000138484
Transcript ID Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000138484 80.758±16.88 53.211±29.42 31.882±0.00 61.743±6.30 19.482±0.92 53.629±13.04 39.599±12.26 3.883±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KF CIL_0003KF_0003 CGP 11:116837432-116854263
CIL_0003KE CIL_0003KE_0003 CGP 11:116843278-116854263
CIL_0003U9 CIL_0003U9_0003 CGP 11:116849901-116875635

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000146446 srsf2a-005 nonsense_mediated_decay Danio_rerio 3e-40 171
ENSDART00000153102 srsf2a-009 nonsense_mediated_decay Danio_rerio 3e-40 171
ENSDART00000153210 srsf2a-010 retained_intron Danio_rerio 3e-40 171
ENSDART00000080173 srsf2a-001 protein_coding Danio_rerio 4e-39 167
ENST00000359995 SRSF2-001 protein_coding Homo_sapiens 0 579
ENST00000392485 SRSF2-003 protein_coding Homo_sapiens 0 915
ENST00000452355 SRSF2-005 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000508921 SRSF2-002 protein_coding Homo_sapiens 0.0000000000001 82
ENST00000582449 SRSF2-006 retained_intron Homo_sapiens 0 549
ENST00000585202 SRSF2-004 nonsense_mediated_decay Homo_sapiens 0 652
ENST00000586622 MFSD11-001 protein_coding Homo_sapiens 0 226
ENST00000586778 SRSF2-016 retained_intron Homo_sapiens 0 723
ENST00000587424 SRSF8-002 protein_coding Homo_sapiens 0 364
ENST00000589919 SRSF2-017 retained_intron Homo_sapiens 0 510
ENST00000592676 SRSF2-015 retained_intron Homo_sapiens 0 627

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