C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092404 Srsf2-001 ENSMUSG00000034120 10090 - 11:116849901-116853094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092404
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092404 65.158±14.46 177.352±82.36 135.382±32.38 148.745±101.44 123.327±95.80 245.222±65.97 40.105±3.87 46.571±7.16 137.962±102.71 138.774±35.16 33.753±1.85 207.157±137.00 101.425±60.10 66.360±7.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KF CIL_0003KF_0003 CGP 11:116837432-116854263
CIL_0003KE CIL_0003KE_0003 CGP 11:116843278-116854263
CIL_0003U9 CIL_0003U9_0003 CGP 11:116849901-116875635

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005681 IDA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000080173 srsf2a-001 protein_coding Danio_rerio 0 195
ENSDART00000146446 srsf2a-005 nonsense_mediated_decay Danio_rerio 4e-39 167
ENSDART00000153102 srsf2a-009 nonsense_mediated_decay Danio_rerio 4e-39 167
ENSDART00000153210 srsf2a-010 retained_intron Danio_rerio 4e-39 167
ENST00000315132 AC004870.5-001 processed_pseudogene Homo_sapiens 0 350
ENST00000358156 SRSF2-007 protein_coding Homo_sapiens 0 531
ENST00000359995 SRSF2-001 protein_coding Homo_sapiens 0 2156
ENST00000392485 SRSF2-003 protein_coding Homo_sapiens 0 1358
ENST00000442518 RP11-60C6.5-001 processed_pseudogene Homo_sapiens 0 350
ENST00000452355 SRSF2-005 nonsense_mediated_decay Homo_sapiens 0 802
ENST00000508921 SRSF2-002 protein_coding Homo_sapiens 0 1040
ENST00000582449 SRSF2-006 retained_intron Homo_sapiens 0 1327
ENST00000583836 SRSF2-008 protein_coding Homo_sapiens 0 488
ENST00000585202 SRSF2-004 nonsense_mediated_decay Homo_sapiens 0 881
ENST00000586622 MFSD11-001 protein_coding Homo_sapiens 0 411
ENST00000586778 SRSF2-016 retained_intron Homo_sapiens 0 525
ENST00000587424 SRSF8-002 protein_coding Homo_sapiens 0 769
ENST00000588460 MFSD11-002 protein_coding Homo_sapiens 0 527
ENST00000589919 SRSF2-017 retained_intron Homo_sapiens 0 433
ENST00000591864 MFSD11-004 protein_coding Homo_sapiens 0 350
ENST00000621483 MFSD11-202 protein_coding Homo_sapiens 0 411

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