C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TRAF3 interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034292 Traf3ip1 10090 + 1:91494647-91529307 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047242 Traf3ip1-001 91494694-91529307 protein_coding
  ENSMUST00000187588 Traf3ip1-002 91518262-91529307 retained_intron
  ENSMUST00000189341 Traf3ip1-003 91494647-91527956 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047242ENSMUST00000187588ENSMUST00000189341
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047242 0.797±0.33 0.805±0.22 3.067±0.05 2.803±1.30 0.458±0.05 N/A 0.957±0.25 0.809±0.23 1.855±1.00 2.121±0.65 1.350±0.40 4.430±2.54 1.426±0.30 2.062±0.01
ENSMUST00000187588 1.535±0.39 N/A 2.419±1.40 3.711±2.42 1.206±0.00 2.113±0.88 N/A 2.144±1.16 0.818±0.24 4.283±1.76 0.311±0.05 3.946±1.20 0.643±0.19 5.879±0.83
ENSMUST00000189341 0.973±0.03 1.119±0.26 0.886±0.00 3.231±0.00 N/A 1.132±0.29 1.036±0.00 2.239±0.00 0.887±0.41 N/A 0.669±0.00 4.415±1.91 1.000±0.71 30.778±40.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0003NE CIL_0003NE_0002 CGP 1:91415982-91529307
CIL_0004UF CIL_0004UF_0003 CGP 1:91494647-91559589

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005813 IDA centrosome
GO:0005929 IDA cilium
GO:0005930 IDA axoneme
GO:0008017 IEA microtubule binding
GO:0021532 IMP neural tube patterning
GO:0030992 IDA intraciliary transport particle B
GO:0031076 IMP embryonic camera-type eye development
GO:0032688 IMP negative regulation of interferon-beta production
GO:0035050 IMP embryonic heart tube development
GO:0036064 IDA ciliary basal body
GO:0036342 IMP post-anal tail morphogenesis
GO:0042073 IBA intraciliary transport
GO:0042384 IMP cilium assembly
GO:0042733 IMP embryonic digit morphogenesis
GO:0050687 IMP negative regulation of defense response to virus
GO:1901621 IMP negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010300 traf3ip1 TNF receptor-associated factor 3 interacting protein 1 protein_coding Danio_rerio
ENSG00000204104 TRAF3IP1 TNF receptor-associated factor 3 interacting protein 1 protein_coding Homo_sapiens

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