C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TNF receptor-associated factor 3 interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204104 TRAF3IP1 9606 + 2:238320441-238400900 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373327 TRAF3IP1-001 238320441-238400900 protein_coding
  ENST00000391993 TRAF3IP1-002 238320441-238400822 protein_coding
  ENST00000409739 TRAF3IP1-003 238320536-238329342 nonsense_mediated_decay
  ENST00000462122 TRAF3IP1-004 238347183-238397680 retained_intron
  ENST00000483951 TRAF3IP1-005 238397422-238398971 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373327ENST00000391993ENST00000409739ENST00000462122ENST00000483951
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373327 N/A N/A N/A N/A N/A N/A 0.383±0.00 N/A 0.317±0.00 N/A N/A N/A 0.206±0.00 5.286±1.02
ENST00000391993 4.481±0.00 3.008±0.00 0.224±0.00 2.600±1.89 4.207±0.00 1.471±1.06 0.956±0.88 2.179±1.96 1.000±0.07 2.031±1.41 2.327±2.08 5.511±1.24 2.465±1.20 7.519±3.32
ENST00000409739 5.664±0.00 3.922±0.00 0.829±0.00 11.859±0.00 3.587±3.05 3.376±2.94 2.463±0.00 N/A N/A 5.825±0.00 N/A 8.415±0.00 1.126±0.00 15.898±5.79
ENST00000462122 N/A N/A 0.746±0.00 2.188±0.00 N/A 1.161±0.00 N/A 0.582±0.00 1.404±0.00 N/A N/A 8.900±7.49 8.171±0.00 67.191±0.00
ENST00000483951 N/A N/A N/A N/A N/A 3.096±0.00 N/A N/A N/A N/A N/A 2.675±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NE CIL_0003NE_0001 CGP 2:238244038-238400900
CIL_0004UF CIL_0004UF_0002 CGP 2:238320441-238452250

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005813 IBA centrosome
GO:0005929 IBA cilium
GO:0005930 IEA axoneme
GO:0008017 IEA microtubule binding
GO:0021532 IEA neural tube patterning
GO:0030992 IBA intraciliary transport particle B
GO:0031076 IEA embryonic camera-type eye development
GO:0032688 IEA negative regulation of interferon-beta production
GO:0035050 IEA embryonic heart tube development
GO:0036064 IEA ciliary basal body
GO:0036342 IEA post-anal tail morphogenesis
GO:0042073 IBA intraciliary transport
GO:0042384 IBA cilium assembly
GO:0042733 IEA embryonic digit morphogenesis
GO:0050687 IEA negative regulation of defense response to virus
GO:1901621 IEA negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010300 traf3ip1 TNF receptor-associated factor 3 interacting protein 1 protein_coding Danio_rerio
ENSMUSG00000034292 Traf3ip1 TRAF3 interacting protein 1 protein_coding Mus_musculus

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