C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRAF3 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047242 Traf3ip1-001 ENSMUSG00000034292 10090 + 1:91494694-91529307 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047242
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047242 0.797±0.33 0.805±0.22 3.067±0.05 2.803±1.30 0.458±0.05 0.957±0.25 0.809±0.23 1.855±1.00 2.121±0.65 1.350±0.40 4.430±2.54 1.426±0.30 2.062±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0003NE CIL_0003NE_0002 CGP 1:91415982-91529307
CIL_0004UF CIL_0004UF_0003 CGP 1:91494647-91559589

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005813 IDA centrosome
GO:0005929 IDA cilium
GO:0005930 IDA axoneme
GO:0008017 IEA microtubule binding
GO:0021532 IMP neural tube patterning
GO:0030992 IDA intraciliary transport particle B
GO:0031076 IMP embryonic camera-type eye development
GO:0032688 IMP negative regulation of interferon-beta production
GO:0035050 IMP embryonic heart tube development
GO:0036064 IDA ciliary basal body
GO:0036342 IMP post-anal tail morphogenesis
GO:0042073 IBA intraciliary transport
GO:0042384 IMP cilium assembly
GO:0042733 IMP embryonic digit morphogenesis
GO:0050687 IMP negative regulation of defense response to virus
GO:1901621 IMP negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373327 TRAF3IP1-001 protein_coding Homo_sapiens 0 811
ENST00000391993 TRAF3IP1-002 protein_coding Homo_sapiens 0 1373
ENST00000409739 TRAF3IP1-003 nonsense_mediated_decay Homo_sapiens 5.60519e-45 185
ENST00000462122 TRAF3IP1-004 retained_intron Homo_sapiens 0 645
ENST00000483951 TRAF3IP1-005 retained_intron Homo_sapiens 0 468

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