C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 59
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034317 Trim59 10090 - 3:69035288-69044755 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000107802 Trim59-001 69035288-69044755 protein_coding
  ENSMUST00000136512 Trim59-002 69036837-69044715 protein_coding
  ENSMUST00000142560 Trim59-005 69043562-69044715 retained_intron
  ENSMUST00000143454 Trim59-004 69037841-69044715 protein_coding
  ENSMUST00000153259 Trim59-003 69043789-69044723 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107802ENSMUST00000136512ENSMUST00000142560ENSMUST00000143454ENSMUST00000153259
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107802 0.812±0.61 0.256±0.11 0.991±0.07 5.762±3.62 0.843±0.51 0.535±0.24 0.101±0.05 0.251±0.11 14.824±15.67 0.312±0.15 0.130±0.19 1.884±1.41 3.833±2.18 2.840±1.10
ENSMUST00000136512 N/A 0.190±0.07 N/A N/A 0.354±0.01 0.165±0.07 0.028±0.00 0.034±0.00 0.038±0.00 0.146±0.00 N/A 0.477±0.22 N/A 3.359±0.00
ENSMUST00000142560 N/A N/A N/A N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000143454 N/A N/A N/A N/A N/A 0.270±0.00 N/A N/A 0.078±0.00 N/A N/A 0.866±0.42 N/A N/A
ENSMUST00000153259 N/A 0.347±0.17 N/A N/A 0.425±0.04 0.241±0.03 N/A 0.148±0.00 N/A 0.088±0.00 N/A 1.738±0.75 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JQ CIL_0004JQ_0003 CGP 3:69004738-69044755
CIL_0001ZB CIL_0001ZB_0002 CGP 3:69035288-69127113

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IDA protein ubiquitination
GO:0043124 IDA negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 IDA innate immune response
GO:0046597 IDA negative regulation of viral entry into host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079238 TRIM59 tripartite motif containing 59 protein_coding Danio_rerio
ENSG00000213186 TRIM59 tripartite motif containing 59 protein_coding Homo_sapiens
ENSG00000248710 RP11-432B6.3 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000456272} protein_coding Homo_sapiens

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