C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 59
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136512 Trim59-002 ENSMUSG00000034317 10090 - 3:69036837-69044715 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000136512
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000136512 0.190±0.07 0.354±0.01 0.165±0.07 0.028±0.00 0.034±0.00 0.038±0.00 0.146±0.00 0.477±0.22 3.359±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JQ CIL_0004JQ_0003 CGP 3:69004738-69044755
CIL_0001ZB CIL_0001ZB_0002 CGP 3:69035288-69127113

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0008270 IEA zinc ion binding
GO:0016567 IDA protein ubiquitination
GO:0043124 IDA negative regulation of I-kappaB kinase/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309784 TRIM59-001 protein_coding Homo_sapiens 0 1245
ENST00000471155 TRIM59-004 protein_coding Homo_sapiens 0 451
ENST00000471396 TRIM59-005 protein_coding Homo_sapiens 0 603
ENST00000479460 TRIM59-007 protein_coding Homo_sapiens 0 664
ENST00000483754 RP11-432B6.3-001 nonsense_mediated_decay Homo_sapiens 0 1072
ENST00000494486 TRIM59-008 protein_coding Homo_sapiens 0 442
ENST00000496222 TRIM59-006 protein_coding Homo_sapiens 0 582
ENST00000543469 TRIM59-201 protein_coding Homo_sapiens 0 1075

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