C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 59
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107802 Trim59-001 ENSMUSG00000034317 10090 - 3:69035288-69044755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107802
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107802 0.812±0.61 0.256±0.11 0.991±0.07 5.762±3.62 0.843±0.51 0.535±0.24 0.101±0.05 0.251±0.11 14.824±15.67 0.312±0.15 0.130±0.19 1.884±1.41 3.833±2.18 2.840±1.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JQ CIL_0004JQ_0003 CGP 3:69004738-69044755
CIL_0001ZB CIL_0001ZB_0002 CGP 3:69035288-69127113

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IDA protein ubiquitination
GO:0043124 IDA negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 IDA innate immune response
GO:0046597 IDA negative regulation of viral entry into host cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309784 TRIM59-001 protein_coding Homo_sapiens 0 1297
ENST00000471155 TRIM59-004 protein_coding Homo_sapiens 0 451
ENST00000471396 TRIM59-005 protein_coding Homo_sapiens 0 603
ENST00000479460 TRIM59-007 protein_coding Homo_sapiens 0 664
ENST00000483754 RP11-432B6.3-001 nonsense_mediated_decay Homo_sapiens 0 1072
ENST00000494486 TRIM59-008 protein_coding Homo_sapiens 0 442
ENST00000496222 TRIM59-006 protein_coding Homo_sapiens 0 582
ENST00000543469 TRIM59-201 protein_coding Homo_sapiens 0 1075

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