C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: G patch domain containing 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034621 Gpatch8 10090 - 11:102475915-102556392 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069673 Gpatch8-002 102477207-102508447 processed_transcript
  ENSMUST00000125754 Gpatch8-003 102537777-102556392 processed_transcript
  ENSMUST00000126804 Gpatch8-004 102508173-102556199 processed_transcript
  ENSMUST00000127018 Gpatch8-006 102536887-102556176 processed_transcript
  ENSMUST00000131573 Gpatch8-005 102507494-102556199 processed_transcript
  ENSMUST00000143842 Gpatch8-001 102475915-102556199 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069673ENSMUST00000143842
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069673 2.178±0.63 9.888±0.96 2.522±1.02 6.092±0.34 6.462±1.58 7.083±1.78 1.632±0.36 0.999±0.13 1.975±1.09 3.806±1.91 1.653±0.36 7.124±4.54 3.126±1.11 3.442±0.69
ENSMUST00000143842 2.630±1.10 4.179±0.46 6.793±1.07 11.512±1.20 3.086±1.65 3.606±1.29 2.818±0.55 5.306±0.65 2.989±1.52 5.542±1.27 3.753±0.51 6.141±2.20 4.485±1.07 4.072±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005IZ CIL_0005IZ_0002 CGP 11:102453297-102556392

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059768 gpatch8 G patch domain containing 8 protein_coding Danio_rerio
ENSG00000186566 GPATCH8 G patch domain containing 8 protein_coding Homo_sapiens

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