C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G patch domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069673 Gpatch8-002 ENSMUSG00000034621 10090 - 11:102477207-102508447 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069673
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069673 2.178±0.63 9.888±0.96 2.522±1.02 6.092±0.34 6.462±1.58 7.083±1.78 1.632±0.36 0.999±0.13 1.975±1.09 3.806±1.91 1.653±0.36 7.124±4.54 3.126±1.11 3.442±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005IZ CIL_0005IZ_0002 CGP 11:102453297-102556392

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000151745 gpatch8-004 retained_intron Danio_rerio 0.0000000000001 84
ENST00000335500 GPATCH8-003 retained_intron Homo_sapiens 0 5397
ENST00000585614 GPATCH8-010 protein_coding Homo_sapiens 0 438
ENST00000586265 GPATCH8-007 processed_transcript Homo_sapiens 0 398
ENST00000587228 GPATCH8-002 nonsense_mediated_decay Homo_sapiens 0 4684
ENST00000590041 GPATCH8-006 nonsense_mediated_decay Homo_sapiens 0 438
ENST00000591680 GPATCH8-001 protein_coding Homo_sapiens 0 4684
ENST00000592746 GPATCH8-008 nonsense_mediated_decay Homo_sapiens 0 226

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