C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005IZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000005961-ENSG00000186566 CGP 9606 17:44372180-44503430
GeneTranscriptPositionBiotype
ENSG00000005961 (ITGA2B)
integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41) 		ENST00000262407 (ITGA2B-001) 44372183-44389505 protein_coding
ENST00000587295 (ITGA2B-011) 44372181-44376184 protein_coding
ENST00000588098 (ITGA2B-012) 44372180-44374695 protein_coding
ENST00000589645 (ITGA2B-009) 44383764-44385363 retained_intron
ENST00000591990 (ITGA2B-007) 44383683-44385195 retained_intron
ENST00000592075 (ITGA2B-008) 44383938-44385202 retained_intron
ENST00000592226 (ITGA2B-004) 44380057-44385202 retained_intron
ENST00000592253 (ITGA2B-006) 44383938-44385341 retained_intron
ENST00000592462 (ITGA2B-003) 44373924-44383497 retained_intron
ENST00000592944 (ITGA2B-005) 44384321-44385809 retained_intron
ENSG00000186566 (GPATCH8)
G patch domain containing 8 		ENST00000335500 (GPATCH8-003) 44395284-44465935 retained_intron
ENST00000585614 (GPATCH8-010) 44401337-44503391 protein_coding
ENST00000586037 (GPATCH8-009) 44436507-44503403 nonsense_mediated_decay
ENST00000586265 (GPATCH8-007) 44424377-44445922 processed_transcript
ENST00000587228 (GPATCH8-002) 44397416-44503404 nonsense_mediated_decay
ENST00000588554 (GPATCH8-005) 44474420-44503406 protein_coding
ENST00000590041 (GPATCH8-006) 44401408-44503389 nonsense_mediated_decay
ENST00000591680 (GPATCH8-001) 44397416-44503401 protein_coding
ENST00000592154 (GPATCH8-004) 44473290-44503430 protein_coding
ENST00000592746 (GPATCH8-008) 44435069-44503403 nonsense_mediated_decay
ENSG00000240589 (RN7SL258P)
RNA, 7SL, cytoplasmic 258, pseudogene 		ENST00000478664 (RN7SL258P-201) 44409059-44409358 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005IZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034664-ENSMUSG00000034621 CGP 10090 11:102453297-102556392
GeneTranscriptPositionBiotype
ENSMUSG00000034621 (Gpatch8)
G patch domain containing 8 		ENSMUST00000069673 (Gpatch8-002) 102477207-102508447 processed_transcript
ENSMUST00000125754 (Gpatch8-003) 102537777-102556392 processed_transcript
ENSMUST00000126804 (Gpatch8-004) 102508173-102556199 processed_transcript
ENSMUST00000127018 (Gpatch8-006) 102536887-102556176 processed_transcript
ENSMUST00000131573 (Gpatch8-005) 102507494-102556199 processed_transcript
ENSMUST00000143842 (Gpatch8-001) 102475915-102556199 protein_coding
ENSMUSG00000034664 (Itga2b)
integrin alpha 2b 		ENSMUST00000103086 (Itga2b-001) 102453297-102469883 protein_coding
ENSMUST00000124767 (Itga2b-005) 102461212-102461937 processed_transcript
ENSMUST00000128752 (Itga2b-010) 102455839-102457320 processed_transcript
ENSMUST00000130433 (Itga2b-006) 102457510-102460835 processed_transcript
ENSMUST00000130757 (Itga2b-003) 102467800-102470122 processed_transcript
ENSMUST00000131247 (Itga2b-008) 102457200-102458359 processed_transcript
ENSMUST00000134735 (Itga2b-009) 102453304-102456190 processed_transcript
ENSMUST00000145925 (Itga2b-004) 102466287-102466955 processed_transcript
ENSMUST00000149519 (Itga2b-002) 102456472-102467199 processed_transcript
ENSMUST00000151625 (Itga2b-007) 102455897-102458565 processed_transcript
ENSMUSG00000081677 (Mdk-ps1)
midkine pseudogene 1 		ENSMUST00000119782 (Mdk-ps1-001) 102545702-102546022 processed_pseudogene
ENSMUSG00000082487 (Gm11628)
predicted gene 11628 		ENSMUST00000117568 (Gm11628-001) 102492439-102492609 processed_pseudogene
ENSMUSG00000092641 (Gm23563)
predicted gene, 23563 		ENSMUST00000174900 (Gm23563-201) 102458724-102458974 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IZ_0001ENSG00000005961ENST00000262407ENST00000587295ENST00000588098ENST00000589645ENST00000591990ENST00000592075ENST00000592226ENST00000592253ENST00000592462ENST00000592944ENSG00000186566ENST00000335500ENST00000585614ENST00000586037ENST00000586265ENST00000587228ENST00000588554ENST00000590041ENST00000591680ENST00000592154ENST00000592746ENSG00000240589ENST00000478664CIL_0005IZ_0002ENSMUSG00000034621ENSMUST00000069673ENSMUST00000125754ENSMUST00000126804ENSMUST00000127018ENSMUST00000131573ENSMUST00000143842ENSMUSG00000034664ENSMUST00000103086ENSMUST00000124767ENSMUST00000128752ENSMUST00000130433ENSMUST00000130757ENSMUST00000131247ENSMUST00000134735ENSMUST00000145925ENSMUST00000149519ENSMUST00000151625ENSMUSG00000081677ENSMUST00000119782ENSMUSG00000082487ENSMUST00000117568ENSMUSG00000092641ENSMUST00000174900
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IZ_0001ENSG00000005961ENST00000262407ENST00000587295ENST00000588098ENST00000589645ENST00000592226ENST00000592253ENST00000592462ENST00000592944ENSG00000186566ENST00000335500ENST00000585614ENST00000591680ENST00000592154ENSG00000240589ENST00000478664CIL_0005IZ_0002ENSMUSG00000034621ENSMUST00000069673ENSMUST00000143842ENSMUSG00000034664ENSMUST00000103086ENSMUST00000128752ENSMUST00000130433ENSMUST00000131247ENSMUST00000134735ENSMUST00000149519ENSMUST00000151625ENSMUSG00000081677ENSMUST00000119782ENSMUSG00000082487ENSMUST00000117568ENSMUSG00000092641ENSMUST00000174900
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005961 ENST00000262407 1.052±0.00 0.256±0.00 0.041±0.00 0.199±0.16 0.234±0.00 0.231±0.12 0.088±0.00 0.073±0.00 0.021±0.00 2.701±2.49 N/A 0.157±0.09 0.580±0.06 0.810±0.08
ENST00000587295 N/A N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588098 N/A N/A N/A N/A N/A N/A 0.173±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000589645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.400±0.00 N/A N/A
ENST00000591990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592226 N/A N/A N/A N/A N/A 0.050±0.00 N/A 0.176±0.00 N/A N/A 0.092±0.00 0.201±0.01 N/A N/A
ENST00000592253 N/A N/A 1.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592462 N/A 0.176±0.00 N/A 0.229±0.00 0.186±0.00 N/A 0.044±0.00 0.256±0.00 0.308±0.00 N/A N/A 0.169±0.10 N/A 0.446±0.00
ENST00000592944 N/A N/A N/A N/A N/A N/A 0.254±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000186566 ENST00000335500 N/A N/A 1.392±0.00 N/A 0.785±0.00 0.987±0.00 0.302±0.00 N/A 0.986±0.00 1.348±0.00 N/A N/A N/A N/A
ENST00000585614 N/A N/A N/A N/A N/A N/A N/A 1.673±0.00 N/A N/A N/A N/A N/A N/A
ENST00000586037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591680 N/A N/A N/A N/A N/A N/A 0.244±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000592154 N/A N/A N/A N/A N/A N/A N/A 3.665±0.00 N/A N/A N/A N/A N/A N/A
ENST00000592746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240589 ENST00000478664 N/A 0.121±0.00 1.334±0.00 0.196±0.00 0.531±0.41 2.503±0.00 0.606±0.55 N/A 1.422±0.00 2.539±0.00 1.775±0.00 0.212±0.08 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034621 ENSMUST00000069673 2.178±0.63 9.888±0.96 2.522±1.02 6.092±0.34 6.462±1.58 7.083±1.78 1.632±0.36 0.999±0.13 1.975±1.09 3.806±1.91 1.653±0.36 7.124±4.54 3.126±1.11 3.442±0.69
ENSMUST00000125754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143842 2.630±1.10 4.179±0.46 6.793±1.07 11.512±1.20 3.086±1.65 3.606±1.29 2.818±0.55 5.306±0.65 2.989±1.52 5.542±1.27 3.753±0.51 6.141±2.20 4.485±1.07 4.072±1.03
ENSMUSG00000034664 ENSMUST00000103086 N/A N/A 0.616±0.00 0.900±0.00 3.122±0.68 0.401±0.20 1.052±0.58 0.780±0.25 8.107±8.21 2.940±0.44 0.109±0.06 0.673±0.00 1.819±0.86 0.547±0.00
ENSMUST00000124767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128752 N/A 2.303±1.11 N/A N/A N/A N/A N/A N/A N/A N/A 0.477±0.00 3.409±0.63 N/A N/A
ENSMUST00000130433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.946±2.63 0.635±0.00
ENSMUST00000130757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131247 N/A N/A N/A N/A 3.042±0.00 N/A N/A N/A N/A N/A 0.265±0.00 1.138±0.28 N/A 0.712±0.00
ENSMUST00000134735 1.920±0.14 1.837±0.59 2.362±0.79 N/A N/A 1.157±0.20 N/A 3.026±0.45 N/A N/A 0.269±0.00 3.463±1.67 N/A 0.472±0.00
ENSMUST00000145925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149519 0.482±0.00 0.335±0.00 N/A N/A N/A 0.255±0.00 0.106±0.00 N/A N/A N/A 0.148±0.07 0.719±0.29 0.206±0.00 N/A
ENSMUST00000151625 N/A N/A N/A N/A 5.967±0.00 N/A N/A 2.094±0.00 N/A N/A 0.239±0.10 N/A N/A N/A
ENSMUSG00000081677 ENSMUST00000119782 0.418±0.00 0.335±0.01 0.342±0.00 0.593±0.00 0.565±0.18 1.665±1.57 0.396±0.04 0.482±0.20 0.291±0.17 0.325±0.13 N/A 2.560±1.93 0.401±0.11 0.766±0.44
ENSMUSG00000082487 ENSMUST00000117568 105.755±28.72 5.756±0.00 2.836±0.90 4.843±0.36 N/A 70.645±50.10 11.666±0.50 N/A 1.154±0.00 31.406±0.00 1.836±0.00 7.649±2.90 4.128±3.41 3.034±0.00
ENSMUSG00000092641 ENSMUST00000174900 0.874±0.20 N/A 0.101±0.00 0.265±0.23 0.721±0.02 0.674±0.04 0.820±0.00 0.587±0.16 0.671±0.56 0.582±0.05 N/A 2.726±1.81 0.285±0.31 0.452±0.03

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