C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G patch domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143842 Gpatch8-001 ENSMUSG00000034621 10090 - 11:102475915-102556199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000143842
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000143842 2.630±1.10 4.179±0.46 6.793±1.07 11.512±1.20 3.086±1.65 3.606±1.29 2.818±0.55 5.306±0.65 2.989±1.52 5.542±1.27 3.753±0.51 6.141±2.20 4.485±1.07 4.072±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005IZ CIL_0005IZ_0002 CGP 11:102453297-102556392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335500 GPATCH8-003 retained_intron Homo_sapiens 0 6170
ENST00000578578 KRT18P55-001 transcribed_unprocessed_pseudogene Homo_sapiens 2e-22 111
ENST00000585614 GPATCH8-010 protein_coding Homo_sapiens 0 876
ENST00000586037 GPATCH8-009 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000586265 GPATCH8-007 processed_transcript Homo_sapiens 0 398
ENST00000587228 GPATCH8-002 nonsense_mediated_decay Homo_sapiens 0 5404
ENST00000588554 GPATCH8-005 protein_coding Homo_sapiens 0 243
ENST00000590041 GPATCH8-006 nonsense_mediated_decay Homo_sapiens 0 833
ENST00000591680 GPATCH8-001 protein_coding Homo_sapiens 0 5481
ENST00000592154 GPATCH8-004 protein_coding Homo_sapiens 0 267
ENST00000592746 GPATCH8-008 nonsense_mediated_decay Homo_sapiens 0 233

Loading