C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: G patch domain containing 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186566 GPATCH8 9606 - 17:44395284-44503430 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335500 GPATCH8-003 44395284-44465935 retained_intron
  ENST00000585614 GPATCH8-010 44401337-44503391 protein_coding
  ENST00000586037 GPATCH8-009 44436507-44503403 nonsense_mediated_decay
  ENST00000586265 GPATCH8-007 44424377-44445922 processed_transcript
  ENST00000587228 GPATCH8-002 44397416-44503404 nonsense_mediated_decay
  ENST00000588554 GPATCH8-005 44474420-44503406 protein_coding
  ENST00000590041 GPATCH8-006 44401408-44503389 nonsense_mediated_decay
  ENST00000591680 GPATCH8-001 44397416-44503401 protein_coding
  ENST00000592154 GPATCH8-004 44473290-44503430 protein_coding
  ENST00000592746 GPATCH8-008 44435069-44503403 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungENST00000335500ENST00000585614ENST00000591680ENST00000592154
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung
ENST00000335500 1.392±0.00 0.785±0.00 0.987±0.00 0.302±0.00 N/A 0.986±0.00 1.348±0.00
ENST00000585614 N/A N/A N/A N/A 1.673±0.00 N/A N/A
ENST00000591680 N/A N/A N/A 0.244±0.00 N/A N/A N/A
ENST00000592154 N/A N/A N/A N/A 3.665±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005IZ CIL_0005IZ_0001 CGP 17:44372180-44503430

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059768 gpatch8 G patch domain containing 8 protein_coding Danio_rerio
ENSMUSG00000034621 Gpatch8 G patch domain containing 8 protein_coding Mus_musculus

Loading