C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G patch domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131573 Gpatch8-005 ENSMUSG00000034621 10090 - 11:102507494-102556199 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005IZ CIL_0005IZ_0002 CGP 11:102453297-102556392

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335500 GPATCH8-003 retained_intron Homo_sapiens 4e-35 156
ENST00000578578 KRT18P55-001 transcribed_unprocessed_pseudogene Homo_sapiens 4e-19 100
ENST00000585614 GPATCH8-010 protein_coding Homo_sapiens 0 294
ENST00000586037 GPATCH8-009 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000586265 GPATCH8-007 processed_transcript Homo_sapiens 2e-36 156
ENST00000587228 GPATCH8-002 nonsense_mediated_decay Homo_sapiens 0 556
ENST00000588554 GPATCH8-005 protein_coding Homo_sapiens 0 239
ENST00000590041 GPATCH8-006 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000591680 GPATCH8-001 protein_coding Homo_sapiens 0 435
ENST00000592154 GPATCH8-004 protein_coding Homo_sapiens 0 268
ENST00000592746 GPATCH8-008 nonsense_mediated_decay Homo_sapiens 0 307

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