C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synuclein, beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034891 Sncb 10090 - 13:54758860-54766595 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036825 Sncb-001 54758860-54766595 protein_coding
  ENSMUST00000134110 Sncb-004 54759381-54766097 protein_coding
  ENSMUST00000138067 Sncb-003 54765059-54766492 retained_intron
  ENSMUST00000153829 Sncb-002 54759428-54763067 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000036825ENSMUST00000134110ENSMUST00000138067ENSMUST00000153829
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000036825 0.052±0.01 1.131±0.51 0.054±0.02 56.142±57.45 0.020±0.00 0.880±0.17 0.086±0.02 0.122±0.04 0.028±0.02 0.037±0.00 0.048±0.01 0.010±0.00 0.569±0.31
ENSMUST00000134110 N/A N/A N/A 189.309±0.00 N/A N/A 0.071±0.00 N/A N/A N/A 0.240±0.00 N/A 0.402±0.00
ENSMUST00000138067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.190±0.01 N/A N/A
ENSMUST00000153829 0.072±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.443±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0002ND CIL_0002ND_0002 CGP 13:54736671-54766595
CIL_0002NC CIL_0002NC_0002 CGP 13:54758860-54788459

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005794 IEA Golgi apparatus
GO:0007268 IGI synaptic transmission
GO:0016234 IEA inclusion body
GO:0030426 IEA growth cone
GO:0042417 IGI dopamine metabolic process
GO:0043014 IEA alpha-tubulin binding
GO:0043025 IEA neuronal cell body
GO:0043195 IEA terminal bouton
GO:0043524 IGI negative regulation of neuron apoptotic process
GO:0043679 IEA axon terminus
GO:0045202 IDA synapse
GO:0048487 IEA beta-tubulin binding
GO:0050808 IGI synapse organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041627 sncb synuclein, beta protein_coding Danio_rerio
ENSG00000074317 SNCB synuclein, beta protein_coding Homo_sapiens

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