C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002ND_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169258-ENSG00000074317 CGP 9606 5:176595802-176630556
GeneTranscriptPositionBiotype
ENSG00000074276 (CDHR2)
cadherin-related family member 2 		ENST00000261944 (CDHR2-003) 176549391-176595768 protein_coding
ENST00000416365 (CDHR2-007) 176590601-176591690 retained_intron
ENST00000506348 (CDHR2-002) 176565306-176595697 protein_coding
ENST00000508085 (CDHR2-006) 176586659-176589570 retained_intron
ENST00000510124 (CDHR2-004) 176543541-176568767 nonsense_mediated_decay
ENST00000510636 (CDHR2-001) 176542511-176595974 protein_coding
ENST00000513031 (CDHR2-005) 176586651-176590661 retained_intron
ENSG00000074317 (SNCB)
synuclein, beta 		ENST00000310112 (SNCB-001) 176620084-176630364 protein_coding
ENST00000393693 (SNCB-002) 176620241-176630529 protein_coding
ENST00000506696 (SNCB-003) 176620785-176630000 protein_coding
ENST00000508006 (SNCB-004) 176621214-176630048 retained_intron
ENST00000510387 (SNCB-005) 176620681-176629994 protein_coding
ENST00000614675 (SNCB-201) 176620210-176630556 protein_coding
ENSG00000169258 (GPRIN1)
G protein regulated inducer of neurite outgrowth 1 		ENST00000303991 (GPRIN1-001) 176595802-176610133 protein_coding
CIL_0002ND_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000069227-ENSMUSG00000034891 CGP 10090 13:54736671-54766595
GeneTranscriptPositionBiotype
ENSMUSG00000034891 (Sncb)
synuclein, beta 		ENSMUST00000036825 (Sncb-001) 54758860-54766595 protein_coding
ENSMUST00000134110 (Sncb-004) 54759381-54766097 protein_coding
ENSMUST00000138067 (Sncb-003) 54765059-54766492 retained_intron
ENSMUST00000153829 (Sncb-002) 54759428-54763067 retained_intron
ENSMUSG00000069227 (Gprin1)
G protein-regulated inducer of neurite outgrowth 1 		ENSMUST00000099506 (Gprin1-002) 54736673-54749669 protein_coding
ENSMUST00000135343 (Gprin1-001) 54736671-54749874 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ND_0001ENSG00000074276ENST00000261944ENST00000416365ENST00000506348ENST00000508085ENST00000510124ENST00000510636ENST00000513031ENSG00000074317ENST00000310112ENST00000393693ENST00000506696ENST00000508006ENST00000510387ENST00000614675ENSG00000169258ENST00000303991CIL_0002ND_0002ENSMUSG00000034891ENSMUST00000036825ENSMUST00000134110ENSMUST00000138067ENSMUST00000153829ENSMUSG00000069227ENSMUST00000099506ENSMUST00000135343
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ND_0001ENSG00000074276ENST00000261944ENST00000506348ENST00000508085ENST00000510636ENSG00000074317ENST00000310112ENST00000393693ENST00000506696ENST00000510387ENST00000614675ENSG00000169258ENST00000303991CIL_0002ND_0002ENSMUSG00000034891ENSMUST00000036825ENSMUST00000134110ENSMUST00000138067ENSMUST00000153829ENSMUSG00000069227ENSMUST00000099506ENSMUST00000135343
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000074276 ENST00000261944 N/A N/A N/A N/A N/A 4.747±0.00 N/A 2.735±0.00 6.451±0.00 N/A N/A 1.221±0.00 N/A 0.772±0.00
ENST00000416365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506348 N/A N/A 0.542±0.00 N/A 0.398±0.00 0.276±0.00 0.008±0.00 2.563±0.00 N/A 0.036±0.00 N/A 0.325±0.00 N/A N/A
ENST00000508085 N/A N/A N/A N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510636 N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A 0.099±0.00 N/A N/A 0.291±0.00 N/A N/A
ENST00000513031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000074317 ENST00000310112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.365±0.00 N/A N/A
ENST00000393693 N/A N/A N/A 129.718±111.75 N/A 0.456±0.00 0.130±0.00 N/A 0.050±0.00 0.170±0.00 0.112±0.00 0.075±0.04 0.248±0.00 0.674±0.17
ENST00000506696 N/A N/A N/A N/A N/A N/A N/A N/A 0.099±0.00 0.099±0.00 0.142±0.00 N/A 0.055±0.00 N/A
ENST00000508006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510387 N/A 0.040±0.00 N/A N/A 0.301±0.00 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614675 N/A 0.075±0.00 N/A 39.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169258 ENST00000303991 0.629±0.00 0.359±0.00 N/A 7.137±5.45 0.227±0.14 0.517±0.00 0.252±0.00 N/A N/A 0.392±0.34 0.044±0.00 0.722±0.75 0.645±0.03 1.845±0.36
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034891 ENSMUST00000036825 0.052±0.01 1.131±0.51 0.054±0.02 56.142±57.45 0.020±0.00 0.880±0.17 0.086±0.02 0.122±0.04 0.028±0.02 0.037±0.00 N/A 0.048±0.01 0.010±0.00 0.569±0.31
ENSMUST00000134110 N/A N/A N/A 189.309±0.00 N/A N/A 0.071±0.00 N/A N/A N/A N/A 0.240±0.00 N/A 0.402±0.00
ENSMUST00000138067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.190±0.01 N/A N/A
ENSMUST00000153829 0.072±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.443±0.00
ENSMUSG00000069227 ENSMUST00000099506 0.196±0.08 1.074±0.28 N/A 18.721±6.21 0.117±0.04 0.259±0.16 0.024±0.02 0.025±0.01 0.030±0.01 0.050±0.01 0.007±0.00 0.449±0.14 0.096±0.04 0.052±0.01
ENSMUST00000135343 0.141±0.00 0.149±0.02 N/A 17.414±2.93 0.098±0.06 0.145±0.02 0.026±0.02 0.027±0.01 0.026±0.01 0.060±0.01 0.022±0.01 0.189±0.10 0.037±0.01 0.073±0.00

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