C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synuclein, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036825 Sncb-001 ENSMUSG00000034891 10090 - 13:54758860-54766595 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000036825
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000036825 0.052±0.01 1.131±0.51 0.054±0.02 56.142±57.45 0.020±0.00 0.880±0.17 0.086±0.02 0.122±0.04 0.028±0.02 0.037±0.00 0.048±0.01 0.010±0.00 0.569±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0002ND CIL_0002ND_0002 CGP 13:54736671-54766595
CIL_0002NC CIL_0002NC_0002 CGP 13:54758860-54788459

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005794 IEA Golgi apparatus
GO:0007268 IGI synaptic transmission
GO:0016234 IEA inclusion body
GO:0030426 IEA growth cone
GO:0042417 IGI dopamine metabolic process
GO:0043014 IEA alpha-tubulin binding
GO:0043025 IEA neuronal cell body
GO:0043195 IEA terminal bouton
GO:0043524 IGI negative regulation of neuron apoptotic process
GO:0043679 IEA axon terminus
GO:0045202 IDA synapse
GO:0048487 IEA beta-tubulin binding
GO:0050808 IGI synapse organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310112 SNCB-001 protein_coding Homo_sapiens 0 582
ENST00000393693 SNCB-002 protein_coding Homo_sapiens 0 610
ENST00000506696 SNCB-003 protein_coding Homo_sapiens 0 564
ENST00000508006 SNCB-004 retained_intron Homo_sapiens 0 254
ENST00000510387 SNCB-005 protein_coding Homo_sapiens 0 582
ENST00000614675 SNCB-201 protein_coding Homo_sapiens 0 344

Loading