C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box N2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034998 Foxn2 10090 + 17:88440711-88490533 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000112238 Foxn2-001 88440711-88490533 protein_coding
  ENSMUST00000134107 Foxn2-003 88440758-88478069 retained_intron
  ENSMUST00000141052 Foxn2-002 88440775-88487251 nonsense_mediated_decay
  ENSMUST00000155640 Foxn2-004 88440735-88463037 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112238ENSMUST00000141052
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112238 3.178±0.61 1.217±0.56 2.502±0.35 1.690±0.56 1.683±0.87 1.060±0.43 0.689±0.28 1.359±0.36 2.466±1.13 3.978±0.78 2.215±0.44 2.951±1.39 5.432±2.07 0.619±0.34
ENSMUST00000141052 0.858±0.00 1.491±0.59 N/A 0.618±0.00 2.247±1.00 1.391±0.54 0.784±0.25 0.899±0.00 0.685±0.12 1.261±0.00 N/A 2.023±0.72 N/A 0.459±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063U CIL_00063U_0002 CGP 17:87990859-88490533
CIL_000008 CIL_000008_0002 CGP 17:88440711-88588367

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0035914 IMP skeletal muscle cell differentiation
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045105 foxn2b forkhead box N2b protein_coding Danio_rerio
ENSDARG00000055574 CABZ01056728.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000170802 FOXN2 forkhead box N2 protein_coding Homo_sapiens

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