C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000008_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170802-ENSG00000162869 CGP 9606 2:48314637-48515391
GeneTranscriptPositionBiotype
ENSG00000162869 (PPP1R21)
protein phosphatase 1, regulatory subunit 21 		ENST00000281394 (PPP1R21-001) 48440769-48515386 protein_coding
ENST00000294952 (PPP1R21-009) 48440797-48515386 protein_coding
ENST00000416913 (PPP1R21-008) 48440769-48515385 nonsense_mediated_decay
ENST00000421486 (PPP1R21-011) 48441129-48454728 protein_coding
ENST00000431614 (PPP1R21-007) 48440598-48511468 nonsense_mediated_decay
ENST00000449090 (PPP1R21-201) 48440769-48515391 protein_coding
ENST00000455978 (PPP1R21-013) 48471311-48498501 nonsense_mediated_decay
ENST00000460299 (PPP1R21-005) 48464966-48471450 retained_intron
ENST00000476199 (PPP1R21-006) 48507211-48515386 processed_transcript
ENSG00000170802 (FOXN2)
forkhead box N2 		ENST00000340553 (FOXN2-001) 48314710-48379294 protein_coding
ENST00000413569 (FOXN2-002) 48314637-48373328 protein_coding
ENST00000616844 (FOXN2-201) 48346217-48375565 protein_coding
ENSG00000272663 (RP11-191L17.1)
 ENST00000609028 (RP11-191L17.1-001) 48440043-48440597 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_000008_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034998-ENSMUSG00000034709 CGP 10090 17:88440711-88588367
GeneTranscriptPositionBiotype
ENSMUSG00000034709 (Ppp1r21)
protein phosphatase 1, regulatory subunit 21 		ENSMUST00000038551 (Ppp1r21-001) 88530118-88588367 protein_coding
ENSMUST00000185400 (Ppp1r21-003) 88578730-88588365 retained_intron
ENSMUST00000188064 (Ppp1r21-006) 88575076-88577324 retained_intron
ENSMUST00000189734 (Ppp1r21-004) 88530216-88543436 retained_intron
ENSMUST00000190136 (Ppp1r21-007) 88575194-88579180 retained_intron
ENSMUST00000191340 (Ppp1r21-005) 88562117-88565790 retained_intron
ENSMUSG00000034998 (Foxn2)
forkhead box N2 		ENSMUST00000112238 (Foxn2-001) 88440711-88490533 protein_coding
ENSMUST00000134107 (Foxn2-003) 88440758-88478069 retained_intron
ENSMUST00000141052 (Foxn2-002) 88440775-88487251 nonsense_mediated_decay
ENSMUST00000155640 (Foxn2-004) 88440735-88463037 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000008_0001ENSG00000162869ENST00000281394ENST00000294952ENST00000416913ENST00000421486ENST00000431614ENST00000449090ENST00000455978ENST00000460299ENST00000476199ENSG00000170802ENST00000340553ENST00000413569ENST00000616844ENSG00000272663ENST00000609028CIL_000008_0002ENSMUSG00000034709ENSMUST00000038551ENSMUST00000185400ENSMUST00000188064ENSMUST00000189734ENSMUST00000190136ENSMUST00000191340ENSMUSG00000034998ENSMUST00000112238ENSMUST00000134107ENSMUST00000141052ENSMUST00000155640
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000008_0001ENSG00000162869ENST00000281394ENST00000294952ENST00000416913ENST00000431614ENST00000449090ENST00000455978ENST00000476199ENSG00000170802ENST00000340553ENST00000413569ENST00000616844ENSG00000272663ENST00000609028CIL_000008_0002ENSMUSG00000034709ENSMUST00000038551ENSMUST00000185400ENSMUST00000188064ENSMUSG00000034998ENSMUST00000112238ENSMUST00000141052
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000162869 ENST00000281394 N/A N/A N/A N/A N/A 0.923±0.00 N/A N/A 1.045±0.00 N/A N/A 2.214±0.00 N/A N/A
ENST00000294952 4.107±0.00 7.534±0.00 1.691±0.00 6.416±4.06 3.167±1.02 2.913±0.75 1.709±1.43 3.776±2.94 1.444±0.36 1.234±0.02 2.399±0.00 6.013±0.92 5.485±2.69 7.168±0.36
ENST00000416913 N/A N/A N/A N/A 1.402±0.00 N/A 0.415±0.00 3.375±0.00 N/A 2.188±0.00 N/A 2.014±0.00 1.505±0.41 N/A
ENST00000421486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.270±0.00 N/A N/A
ENST00000449090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A
ENST00000455978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.828±0.00 N/A N/A N/A
ENST00000460299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476199 N/A N/A 3.400±0.00 N/A N/A 1.864±0.00 N/A 6.555±0.00 1.118±0.00 3.661±0.00 1.517±0.00 4.943±0.00 N/A N/A
ENSG00000170802 ENST00000340553 N/A 1.129±0.00 0.815±0.00 1.289±0.12 2.868±1.57 1.770±0.00 0.509±0.00 3.693±0.00 1.102±0.65 5.074±0.00 0.795±0.52 2.508±2.87 0.470±0.29 0.571±0.00
ENST00000413569 N/A N/A N/A N/A N/A 3.980±0.00 2.933±0.00 N/A N/A N/A 2.572±0.00 9.455±0.00 N/A N/A
ENST00000616844 N/A N/A N/A N/A 2.711±0.00 N/A 0.781±0.00 N/A N/A N/A N/A N/A N/A 0.377±0.00
ENSG00000272663 ENST00000609028 0.091±0.00 0.031±0.00 1.509±0.00 0.861±0.37 0.406±0.00 0.345±0.00 0.177±0.00 0.285±0.12 N/A 0.492±0.14 0.218±0.00 0.406±0.40 0.192±0.05 5.991±1.42
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034709 ENSMUST00000038551 6.710±0.63 3.780±1.57 7.014±0.57 16.168±6.64 4.445±1.89 3.520±1.82 2.483±0.03 9.796±3.51 4.917±0.95 4.644±1.95 1.530±0.28 7.786±3.39 8.977±1.91 1.246±0.30
ENSMUST00000185400 6.097±1.75 4.788±1.04 4.494±0.68 11.765±0.51 6.781±1.07 7.385±1.08 3.402±0.87 14.419±1.41 4.415±0.91 12.276±1.81 N/A 9.006±2.28 5.545±1.27 2.444±0.96
ENSMUST00000188064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 47.207±0.00 27.171±0.00 9.658±0.00
ENSMUST00000189734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034998 ENSMUST00000112238 3.178±0.61 1.217±0.56 2.502±0.35 1.690±0.56 1.683±0.87 1.060±0.43 0.689±0.28 1.359±0.36 2.466±1.13 3.978±0.78 2.215±0.44 2.951±1.39 5.432±2.07 0.619±0.34
ENSMUST00000134107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141052 0.858±0.00 1.491±0.59 N/A 0.618±0.00 2.247±1.00 1.391±0.54 0.784±0.25 0.899±0.00 0.685±0.12 1.261±0.00 N/A 2.023±0.72 N/A 0.459±0.15
ENSMUST00000155640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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