C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00063U_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138081-ENSG00000170802 CGP 9606 2:47789316-48379294
GeneTranscriptPositionBiotype
ENSG00000116062 (MSH6)
mutS homolog 6 		ENST00000234420 (MSH6-001) 47783082-47810101 protein_coding
ENST00000411819 (MSH6-006) 47784181-47798733 protein_coding
ENST00000420813 (MSH6-005) 47783955-47796036 protein_coding
ENST00000445503 (MSH6-002) 47783082-47806953 nonsense_mediated_decay
ENST00000454137 (MSH6-010) 47695816-47757793 processed_transcript
ENST00000455383 (MSH6-004) 47783585-47798627 protein_coding
ENST00000456246 (MSH6-003) 47783128-47798920 nonsense_mediated_decay
ENST00000493177 (MSH6-007) 47783170-47784976 processed_transcript
ENST00000538136 (MSH6-201) 47783955-47806945 protein_coding
ENST00000540021 (MSH6-202) 47783082-47806945 protein_coding
ENST00000606499 (MSH6-008) 47695819-47791116 protein_coding
ENST00000607272 (MSH6-009) 47695530-47709833 processed_transcript
ENST00000614496 (MSH6-203) 47783082-47806945 protein_coding
ENST00000616033 (MSH6-204) 47783151-47801332 protein_coding
ENST00000622629 (MSH6-205) 47783082-47806952 protein_coding
ENSG00000170802 (FOXN2)
forkhead box N2 		ENST00000340553 (FOXN2-001) 48314710-48379294 protein_coding
ENST00000413569 (FOXN2-002) 48314637-48373328 protein_coding
ENST00000616844 (FOXN2-201) 48346217-48375565 protein_coding
ENSG00000201010 (RN7SKP224)
RNA, 7SK small nuclear pseudogene 224 		ENST00000364140 (RN7SKP224-201) 48217575-48217899 misc_RNA
ENSG00000226473 (AC079807.1)
 ENST00000429993 (AC079807.1-001) 47939738-47940218 processed_pseudogene
ENSG00000230773 (AC079807.4)
 ENST00000447571 (AC079807.4-001) 47941696-48240983 lincRNA
ENST00000587616 (AC079807.4-002) 47945256-48164934 lincRNA
ENSG00000235369 (RPL36AP15)
ribosomal protein L36a pseudogene 15 		ENST00000444514 (RPL36AP15-001) 47797826-47798091 processed_pseudogene
ENSG00000236549 (AC079807.3)
 ENST00000422792 (AC079807.3-001) 47883455-47883909 processed_pseudogene
CIL_00063U_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005371-ENSMUSG00000034998 CGP 10090 17:87990859-88490533
GeneTranscriptPositionBiotype
ENSMUSG00000005370 (Msh6)
mutS homolog 6 (E. coli) 		ENSMUST00000005503 (Msh6-201) 87975050-87990883 protein_coding
ENSMUSG00000005371 (Fbxo11)
F-box protein 11 		ENSMUST00000005504 (Fbxo11-001) 87990859-88065291 protein_coding
ENSMUST00000127334 (Fbxo11-003) 87993213-88000982 retained_intron
ENSMUST00000130379 (Fbxo11-004) 87990859-88065028 protein_coding
ENSMUST00000135639 (Fbxo11-002) 87991418-88008696 nonsense_mediated_decay
ENSMUSG00000034998 (Foxn2)
forkhead box N2 		ENSMUST00000112238 (Foxn2-001) 88440711-88490533 protein_coding
ENSMUST00000134107 (Foxn2-003) 88440758-88478069 retained_intron
ENSMUST00000141052 (Foxn2-002) 88440775-88487251 nonsense_mediated_decay
ENSMUST00000155640 (Foxn2-004) 88440735-88463037 protein_coding
ENSMUSG00000058869 (Gm4832)
predicted gene 4832 		ENSMUST00000182679 (Gm4832-001) 88130715-88131113 transcribed_processed_pseudogene
ENSMUST00000183295 (Gm4832-002) 88125512-88131006 processed_transcript
ENSMUSG00000097676 (Gm26612)
predicted gene, 26612 		ENSMUST00000180785 (Gm26612-201) 88146084-88159761 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00063U_0001ENSG00000116062ENST00000234420ENST00000411819ENST00000420813ENST00000445503ENST00000454137ENST00000455383ENST00000456246ENST00000493177ENST00000538136ENST00000540021ENST00000606499ENST00000607272ENST00000614496ENST00000616033ENST00000622629ENSG00000170802ENST00000340553ENST00000413569ENST00000616844ENSG00000201010ENST00000364140ENSG00000226473ENST00000429993ENSG00000230773ENST00000447571ENST00000587616ENSG00000235369ENST00000444514ENSG00000236549ENST00000422792CIL_00063U_0002ENSMUSG00000005370ENSMUST00000005503ENSMUSG00000005371ENSMUST00000005504ENSMUST00000127334ENSMUST00000130379ENSMUST00000135639ENSMUSG00000034998ENSMUST00000112238ENSMUST00000134107ENSMUST00000141052ENSMUST00000155640ENSMUSG00000058869ENSMUST00000182679ENSMUST00000183295ENSMUSG00000097676ENSMUST00000180785
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00063U_0001ENSG00000116062ENST00000234420ENST00000538136ENST00000540021ENST00000622629ENSG00000170802ENST00000340553ENST00000413569ENST00000616844ENSG00000201010ENST00000364140ENSG00000226473ENST00000429993ENSG00000230773ENST00000447571ENST00000587616ENSG00000235369ENST00000444514ENSG00000236549ENST00000422792CIL_00063U_0002ENSMUSG00000005370ENSMUST00000005503ENSMUSG00000005371ENSMUST00000005504ENSMUST00000127334ENSMUST00000130379ENSMUST00000135639ENSMUSG00000034998ENSMUST00000112238ENSMUST00000141052ENSMUSG00000058869ENSMUST00000182679ENSMUST00000183295ENSMUSG00000097676ENSMUST00000180785
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116062 ENST00000234420 N/A N/A 0.873±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000411819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.675±0.00 N/A N/A N/A
ENST00000540021 N/A 8.153±0.00 N/A 9.611±0.00 7.195±0.00 N/A 1.095±0.00 6.729±0.00 4.039±1.20 4.488±0.00 N/A 18.854±3.86 8.087±6.11 26.414±5.24
ENST00000606499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622629 N/A N/A 1.687±0.00 N/A N/A N/A 2.308±1.34 N/A N/A 3.944±0.17 N/A 12.672±0.00 7.207±4.84 22.320±0.00
ENSG00000170802 ENST00000340553 N/A 1.129±0.00 0.815±0.00 1.289±0.12 2.868±1.57 1.770±0.00 0.509±0.00 3.693±0.00 1.102±0.65 5.074±0.00 0.795±0.52 2.508±2.87 0.470±0.29 0.571±0.00
ENST00000413569 N/A N/A N/A N/A N/A 3.980±0.00 2.933±0.00 N/A N/A N/A 2.572±0.00 9.455±0.00 N/A N/A
ENST00000616844 N/A N/A N/A N/A 2.711±0.00 N/A 0.781±0.00 N/A N/A N/A N/A N/A N/A 0.377±0.00
ENSG00000201010 ENST00000364140 N/A 0.065±0.00 N/A 0.073±0.00 N/A N/A N/A 0.201±0.00 N/A 0.125±0.00 N/A 0.171±0.00 N/A 0.120±0.00
ENSG00000226473 ENST00000429993 N/A N/A N/A 0.131±0.00 0.644±0.52 0.056±0.00 N/A 0.030±0.00 0.054±0.00 0.056±0.00 N/A 0.052±0.00 N/A 0.078±0.01
ENSG00000230773 ENST00000447571 0.047±0.00 0.075±0.00 N/A N/A N/A 0.051±0.00 N/A 0.061±0.00 N/A N/A N/A 0.019±0.00 0.042±0.02 N/A
ENST00000587616 0.016±0.00 N/A N/A 0.137±0.00 N/A N/A 0.028±0.00 0.047±0.00 N/A 0.086±0.00 N/A 0.006±0.00 0.062±0.00 0.063±0.00
ENSG00000235369 ENST00000444514 0.051±0.00 0.526±0.00 4.145±0.00 0.827±0.00 0.437±0.18 5.372±0.00 0.404±0.25 N/A 1.400±1.35 1.667±0.71 N/A 1.654±2.20 N/A 0.090±0.00
ENSG00000236549 ENST00000422792 N/A 0.159±0.00 0.240±0.00 0.156±0.00 0.492±0.00 0.787±0.00 0.073±0.02 0.489±0.15 0.046±0.00 0.516±0.00 N/A 0.150±0.10 N/A 0.175±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005370 ENSMUST00000005503 3.515±1.56 3.208±0.00 4.504±0.32 7.893±0.98 3.647±1.15 3.155±0.39 1.268±0.23 2.438±0.25 5.786±5.53 3.029±0.43 1.308±0.20 9.224±7.12 12.579±9.23 6.346±6.00
ENSMUSG00000005371 ENSMUST00000005504 1.581±0.00 N/A 5.264±0.00 10.003±0.90 4.009±0.00 N/A N/A N/A 2.320±0.24 N/A 3.970±0.90 5.350±0.27 4.456±1.55 N/A
ENSMUST00000127334 N/A N/A N/A 66.043±0.00 N/A N/A N/A N/A N/A N/A N/A 61.850±0.00 39.506±10.04 38.038±0.00
ENSMUST00000130379 10.777±2.97 11.788±2.06 11.586±0.12 20.013±4.17 10.305±1.67 7.362±1.21 5.619±0.56 8.116±1.37 4.918±1.09 16.136±1.41 2.781±0.99 11.748±3.38 7.823±1.86 3.984±0.59
ENSMUST00000135639 6.139±2.08 N/A N/A 14.845±4.79 7.474±2.02 N/A 3.778±1.16 4.230±0.23 N/A 15.778±0.00 N/A 20.099±4.94 15.380±0.00 N/A
ENSMUSG00000034998 ENSMUST00000112238 3.178±0.61 1.217±0.56 2.502±0.35 1.690±0.56 1.683±0.87 1.060±0.43 0.689±0.28 1.359±0.36 2.466±1.13 3.978±0.78 2.215±0.44 2.951±1.39 5.432±2.07 0.619±0.34
ENSMUST00000134107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141052 0.858±0.00 1.491±0.59 N/A 0.618±0.00 2.247±1.00 1.391±0.54 0.784±0.25 0.899±0.00 0.685±0.12 1.261±0.00 N/A 2.023±0.72 N/A 0.459±0.15
ENSMUST00000155640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058869 ENSMUST00000182679 N/A N/A N/A 0.246±0.00 N/A N/A N/A N/A 0.201±0.00 N/A N/A N/A 0.643±0.34 N/A
ENSMUST00000183295 0.167±0.02 N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A 0.234±0.00 N/A 0.119±0.10 N/A
ENSMUSG00000097676 ENSMUST00000180785 0.129±0.00 N/A N/A 0.024±0.02 N/A N/A N/A 0.047±0.00 0.009±0.00 N/A N/A 0.048±0.02 0.041±0.01 0.091±0.04

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