C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035168 Tanc1 10090 + 2:59612042-59846149 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037526 Tanc1-201 59612044-59846149 protein_coding
  ENSMUST00000056900 Tanc1-005 59742802-59821381 retained_intron
  ENSMUST00000112568 Tanc1-001 59612042-59845717 protein_coding
  ENSMUST00000126271 Tanc1-008 59769362-59772450 processed_transcript
  ENSMUST00000127013 Tanc1-004 59706844-59724847 processed_transcript
  ENSMUST00000128030 Tanc1-010 59630063-59647005 retained_intron
  ENSMUST00000136248 Tanc1-007 59779711-59785499 processed_transcript
  ENSMUST00000139863 Tanc1-011 59646811-59845717 protein_coding
  ENSMUST00000142573 Tanc1-009 59612075-59649455 retained_intron
  ENSMUST00000147650 Tanc1-006 59841740-59845715 retained_intron
  ENSMUST00000162857 Tanc1-012 59806068-59809504 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037526ENSMUST00000112568ENSMUST00000139863ENSMUST00000147650
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037526 1.295±0.42 1.012±0.34 1.249±0.10 N/A 1.229±0.00 1.144±0.00 0.586±0.00 1.567±0.14 0.309±0.14 1.722±0.00 0.248±0.00 N/A 1.124±0.42 N/A
ENSMUST00000112568 3.238±0.23 2.950±1.19 3.223±0.51 3.117±3.26 3.560±1.06 3.201±0.92 2.525±0.73 3.560±1.62 0.547±0.18 8.500±1.70 0.740±0.24 9.622±5.49 5.058±2.62 0.433±0.16
ENSMUST00000139863 2.774±0.00 1.303±0.00 1.213±0.16 0.558±0.16 2.415±0.84 1.848±0.22 0.772±0.29 2.786±1.21 0.208±0.08 2.495±0.00 0.384±0.13 7.235±4.01 4.367±1.10 0.121±0.00
ENSMUST00000147650 4.876±1.24 1.954±0.65 5.147±0.42 0.675±0.01 2.611±0.58 3.498±0.89 1.217±0.03 6.982±1.50 0.639±0.21 6.846±0.55 0.595±0.14 7.872±0.93 3.102±1.14 3.558±1.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083G CIL_00083G_0002 VISTA 2:59262344-59863132
CIL_0007X8 CIL_0007X8_0002 VISTA 2:59297936-59901449
CIL_0008PS CIL_0008PS_0002 VISTA 2:59368906-59972125
CIL_0005U4 CIL_0005U4_0002 CGP 2:59484653-59846149
CIL_0008P7 CIL_0008P7_0002 VISTA 2:59528773-60129361
CIL_0005U3 CIL_0005U3_0002 CGP 2:59612042-59882591

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007520 IMP myoblast fusion
GO:0008542 IMP visual learning
GO:0030054 IEA cell junction
GO:0030425 IDA dendrite
GO:0043025 IDA neuronal cell body
GO:0043679 IDA axon terminus
GO:0045211 IEA postsynaptic membrane
GO:0097062 IMP dendritic spine maintenance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077073 tanc1a tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a protein_coding Danio_rerio
ENSDARG00000089190 TANC1 (2 of 2) tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein_coding Danio_rerio
ENSG00000115183 TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein_coding Homo_sapiens

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