C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DENN/MADD domain containing 5A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035901 Dennd5a 10090 - 7:109893780-109960470 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000080437 Dennd5a-001 109893780-109960470 protein_coding
  ENSMUST00000106722 Dennd5a-002 109893780-109960400 protein_coding
  ENSMUST00000130354 Dennd5a-008 109893780-109896699 retained_intron
  ENSMUST00000134331 Dennd5a-006 109899072-109900464 retained_intron
  ENSMUST00000139579 Dennd5a-005 109921264-109925050 processed_transcript
  ENSMUST00000151923 Dennd5a-004 109934059-109960323 processed_transcript
  ENSMUST00000154002 Dennd5a-003 109907405-109920650 retained_intron
  ENSMUST00000156858 Dennd5a-007 109896380-109897556 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080437ENSMUST00000106722ENSMUST00000130354
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080437 26.019±8.59 27.311±13.00 16.140±4.43 9.421±1.29 8.893±1.13 6.792±2.44 13.824±1.41 7.843±2.47 3.901±1.56 23.783±9.48 8.714±1.15 24.908±9.67 9.361±3.17 7.249±3.42
ENSMUST00000106722 N/A N/A N/A 23.941±5.25 21.530±0.00 N/A N/A N/A N/A N/A 2.066±0.00 6.801±0.00 N/A N/A
ENSMUST00000130354 N/A 38.724±9.81 N/A N/A 16.113±1.54 9.886±1.62 14.350±0.00 9.592±1.66 4.945±0.85 26.783±0.00 N/A 31.637±9.21 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000499 CIL_000499_0002 CGP 7:109798676-109960470
CIL_0009CP CIL_0009CP_0002 VISTA 7:109862809-110466321
CIL_0001HO CIL_0001HO_0003 CGP 7:109893780-109986929

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0016020 IBA membrane
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0017137 IDA Rab GTPase binding
GO:0032851 ISS positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017006 dennd5a DENN/MADD domain containing 5A protein_coding Danio_rerio
ENSG00000184014 DENND5A DENN/MADD domain containing 5A protein_coding Homo_sapiens

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