C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001HO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000017006-ENSDARG00000080006 CGP 7955 7:66834169-66975055
GeneTranscriptPositionBiotype
ENSDARG00000017006 (dennd5a)
DENN/MADD domain containing 5A 		ENSDART00000060545 (dennd5a-201) 66834169-66953970 protein_coding
ENSDARG00000080006 (tmem41b)
transmembrane protein 41B 		ENSDART00000098277 (tmem41b-201) 66964356-66974907 protein_coding
ENSDART00000110614 (tmem41b-001) 66964862-66975055 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001HO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184014-ENSG00000166471 CGP 9606 11:9138825-9314780
GeneTranscriptPositionBiotype
ENSG00000166471 (TMEM41B)
transmembrane protein 41B 		ENST00000299596 (TMEM41B-003) 9280654-9314567 nonsense_mediated_decay
ENST00000524543 (TMEM41B-002) 9280654-9314636 nonsense_mediated_decay
ENST00000527813 (TMEM41B-005) 9283547-9314630 protein_coding
ENST00000528080 (TMEM41B-001) 9280671-9314780 protein_coding
ENST00000533723 (TMEM41B-004) 9295096-9314633 protein_coding
ENST00000533867 (TMEM41B-006) 9283139-9288073 retained_intron
ENST00000611268 (TMEM41B-201) 9280657-9314567 protein_coding
ENSG00000184014 (DENND5A)
DENN/MADD domain containing 5A 		ENST00000328194 (DENND5A-001) 9138825-9265390 protein_coding
ENST00000524446 (DENND5A-011) 9145062-9152407 protein_coding
ENST00000525784 (DENND5A-014) 9139689-9145815 protein_coding
ENST00000526523 (DENND5A-010) 9175240-9178248 processed_transcript
ENST00000526707 (DENND5A-002) 9145713-9265127 nonsense_mediated_decay
ENST00000527700 (DENND5A-004) 9139504-9172245 retained_intron
ENST00000527896 (DENND5A-009) 9169923-9178917 nonsense_mediated_decay
ENST00000528725 (DENND5A-016) 9139503-9144179 protein_coding
ENST00000529977 (DENND5A-005) 9138830-9145460 retained_intron
ENST00000530044 (DENND5A-003) 9139459-9265087 protein_coding
ENST00000530780 (DENND5A-006) 9204066-9265101 nonsense_mediated_decay
ENST00000530867 (DENND5A-008) 9177930-9178949 retained_intron
ENST00000531580 (DENND5A-012) 9146797-9150759 retained_intron
ENST00000531747 (DENND5A-013) 9141941-9150173 nonsense_mediated_decay
ENST00000532696 (DENND5A-007) 9203532-9206718 retained_intron
ENST00000533737 (DENND5A-015) 9139515-9143452 protein_coding
ENSG00000254884 (PRR13P2)
proline rich 13 pseudogene 2 		ENST00000533804 (PRR13P2-001) 9311284-9311689 processed_pseudogene
ENSG00000255097 (RP11-5L12.1)
 ENST00000528520 (RP11-5L12.1-001) 9242448-9245509 sense_intronic
ENSG00000273725 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000613468 (Metazoa_SRP.1-243) 9279532-9279816 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001HO_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035901-ENSMUSG00000047554 CGP 10090 7:109893780-109986929
GeneTranscriptPositionBiotype
ENSMUSG00000035901 (Dennd5a)
DENN/MADD domain containing 5A 		ENSMUST00000080437 (Dennd5a-001) 109893780-109960470 protein_coding
ENSMUST00000106722 (Dennd5a-002) 109893780-109960400 protein_coding
ENSMUST00000130354 (Dennd5a-008) 109893780-109896699 retained_intron
ENSMUST00000134331 (Dennd5a-006) 109899072-109900464 retained_intron
ENSMUST00000139579 (Dennd5a-005) 109921264-109925050 processed_transcript
ENSMUST00000151923 (Dennd5a-004) 109934059-109960323 processed_transcript
ENSMUST00000154002 (Dennd5a-003) 109907405-109920650 retained_intron
ENSMUST00000156858 (Dennd5a-007) 109896380-109897556 retained_intron
ENSMUSG00000047554 (Tmem41b)
transmembrane protein 41B 		ENSMUST00000094097 (Tmem41b-001) 109972187-109986451 protein_coding
ENSMUST00000118429 (Tmem41b-002) 109973485-109986929 protein_coding
ENSMUST00000119929 (Tmem41b-003) 109973304-109986259 protein_coding
ENSMUST00000124821 (Tmem41b-005) 109976593-109986275 nonsense_mediated_decay
ENSMUST00000125703 (Tmem41b-007) 109974472-109978929 retained_intron
ENSMUST00000135565 (Tmem41b-006) 109976660-109986249 nonsense_mediated_decay
ENSMUST00000151587 (Tmem41b-004) 109979990-109986259 retained_intron
ENSMUST00000154831 (Tmem41b-008) 109976593-109986162 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HO_0001ENSDARG00000017006ENSDART00000060545ENSDARG00000080006ENSDART00000098277ENSDART00000110614CIL_0001HO_0002ENSG00000166471ENST00000299596ENST00000524543ENST00000527813ENST00000528080ENST00000533723ENST00000533867ENST00000611268ENSG00000184014ENST00000328194ENST00000524446ENST00000525784ENST00000526523ENST00000526707ENST00000527700ENST00000527896ENST00000528725ENST00000529977ENST00000530044ENST00000530780ENST00000530867ENST00000531580ENST00000531747ENST00000532696ENST00000533737ENSG00000254884ENST00000533804ENSG00000255097ENST00000528520ENSG00000273725ENST00000613468CIL_0001HO_0003ENSMUSG00000035901ENSMUST00000080437ENSMUST00000106722ENSMUST00000130354ENSMUST00000134331ENSMUST00000139579ENSMUST00000151923ENSMUST00000154002ENSMUST00000156858ENSMUSG00000047554ENSMUST00000094097ENSMUST00000118429ENSMUST00000119929ENSMUST00000124821ENSMUST00000125703ENSMUST00000135565ENSMUST00000151587ENSMUST00000154831
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HO_0001ENSDARG00000017006ENSDART00000060545ENSDARG00000080006ENSDART00000098277ENSDART00000110614CIL_0001HO_0002ENSG00000166471ENST00000299596ENST00000524543ENST00000528080ENST00000611268ENSG00000184014ENST00000328194ENST00000526707ENST00000527700ENST00000528725ENST00000529977ENST00000530044ENST00000531747ENSG00000254884ENST00000533804ENSG00000255097ENST00000528520ENSG00000273725ENST00000613468CIL_0001HO_0003ENSMUSG00000035901ENSMUST00000080437ENSMUST00000106722ENSMUST00000130354ENSMUSG00000047554ENSMUST00000094097ENSMUST00000118429ENSMUST00000119929ENSMUST00000124821ENSMUST00000125703ENSMUST00000135565ENSMUST00000151587
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017006 ENSDART00000060545 N/A N/A N/A 22.036±0.00 N/A N/A 9.776±4.39 0.874±0.31 0.458±0.00 N/A 2.000±0.00 N/A N/A N/A
ENSDARG00000080006 ENSDART00000098277 N/A N/A N/A 0.744±0.00 N/A N/A 0.241±0.00 1.263±0.00 0.440±0.00 N/A 0.630±0.00 N/A N/A N/A
ENSDART00000110614 N/A N/A N/A 2.471±1.38 N/A N/A 0.922±0.06 0.240±0.00 1.193±0.00 N/A 1.701±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166471 ENST00000299596 2.016±0.00 2.601±0.00 N/A N/A 1.363±0.00 0.763±0.00 N/A N/A N/A 3.126±0.00 N/A N/A N/A 3.022±0.00
ENST00000524543 0.985±0.00 2.533±0.00 N/A 8.345±0.00 1.243±0.00 1.641±0.70 1.444±0.95 3.401±1.61 3.912±0.00 4.781±0.00 0.563±0.03 1.959±0.00 2.292±1.60 1.858±0.00
ENST00000527813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528080 N/A N/A 1.302±0.00 2.865±0.00 1.311±0.07 2.255±0.00 0.880±0.46 5.602±0.00 2.139±0.00 2.305±0.13 0.500±0.00 2.129±1.39 2.725±0.31 1.447±0.28
ENST00000533723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.767±0.08 2.142±0.00 1.414±0.00 N/A
ENSG00000184014 ENST00000328194 8.904±0.00 16.818±0.00 N/A 14.762±9.94 12.913±11.24 9.571±8.28 12.750±10.02 10.253±0.00 2.680±0.12 15.118±11.99 6.413±0.00 11.745±4.67 9.348±1.40 11.088±6.52
ENST00000524446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526707 N/A N/A 1.011±0.00 11.309±0.00 N/A N/A N/A N/A N/A N/A 0.827±0.00 0.764±0.00 N/A N/A
ENST00000527700 N/A N/A 0.919±0.00 N/A N/A 1.004±0.00 1.817±0.00 0.384±0.00 2.115±0.00 N/A 0.718±0.00 2.223±1.11 N/A N/A
ENST00000527896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.374±0.00 N/A
ENST00000529977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.183±0.00 N/A N/A
ENST00000530044 N/A N/A 1.852±0.00 5.524±0.00 3.454±0.00 1.186±0.00 3.781±1.85 0.526±0.00 3.794±0.00 2.412±0.00 0.455±0.00 0.975±0.00 4.787±0.00 3.549±0.00
ENST00000530780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531747 N/A N/A N/A N/A N/A N/A N/A 1.412±0.00 N/A N/A N/A N/A N/A N/A
ENST00000532696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254884 ENST00000533804 N/A N/A N/A 0.272±0.04 1.645±0.00 0.265±0.00 0.050±0.00 N/A N/A 1.063±0.00 N/A 1.045±0.59 0.461±0.00 0.292±0.00
ENSG00000255097 ENST00000528520 0.363±0.00 1.433±0.00 N/A 0.384±0.11 0.348±0.06 0.296±0.00 0.427±0.14 0.942±0.00 0.347±0.03 0.495±0.10 0.291±0.00 0.334±0.18 N/A 0.252±0.16
ENSG00000273725 ENST00000613468 0.591±0.00 1.261±0.00 N/A 0.427±0.00 0.447±0.00 0.762±0.00 N/A 0.558±0.00 0.141±0.00 0.717±0.00 N/A 0.868±0.00 0.130±0.00 0.272±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035901 ENSMUST00000080437 26.019±8.59 27.311±13.00 16.140±4.43 9.421±1.29 8.893±1.13 6.792±2.44 13.824±1.41 7.843±2.47 3.901±1.56 23.783±9.48 8.714±1.15 24.908±9.67 9.361±3.17 7.249±3.42
ENSMUST00000106722 N/A N/A N/A 23.941±5.25 21.530±0.00 N/A N/A N/A N/A N/A 2.066±0.00 6.801±0.00 N/A N/A
ENSMUST00000130354 N/A 38.724±9.81 N/A N/A 16.113±1.54 9.886±1.62 14.350±0.00 9.592±1.66 4.945±0.85 26.783±0.00 N/A 31.637±9.21 N/A N/A
ENSMUST00000134331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047554 ENSMUST00000094097 1.999±0.75 2.201±0.52 2.333±0.25 1.723±1.11 1.536±0.32 2.183±0.59 1.441±0.16 1.791±0.60 1.357±0.32 2.618±0.38 0.895±0.26 2.310±0.93 0.839±0.00 1.579±1.03
ENSMUST00000118429 N/A 1.146±0.00 N/A N/A 2.312±1.36 2.544±1.04 N/A 3.984±1.32 2.636±0.00 1.677±0.00 1.106±0.17 1.212±0.00 N/A 6.119±2.15
ENSMUST00000119929 3.795±0.35 3.292±0.75 6.921±0.45 4.917±2.90 4.267±2.61 2.134±0.00 5.248±0.93 2.768±0.50 6.134±1.37 5.234±1.48 4.178±0.90 4.159±2.60 12.844±6.90 4.153±2.36
ENSMUST00000124821 5.134±0.25 2.778±0.44 N/A 5.228±0.00 N/A 7.420±1.71 N/A 4.232±0.00 7.750±0.00 N/A N/A 6.223±1.96 17.789±2.72 5.890±0.00
ENSMUST00000125703 2.884±0.00 N/A N/A 2.643±0.00 2.057±0.00 N/A 3.696±0.83 5.791±0.00 N/A N/A N/A 4.520±0.00 13.817±4.01 8.627±2.76
ENSMUST00000135565 5.262±0.00 9.513±1.14 N/A N/A 6.375±2.06 13.997±2.17 3.060±0.00 9.230±4.48 7.804±1.08 9.877±3.31 N/A 8.799±2.70 N/A N/A
ENSMUST00000151587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.045±0.00 N/A N/A
ENSMUST00000154831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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