C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080437 Dennd5a-001 ENSMUSG00000035901 10090 - 7:109893780-109960470 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080437
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080437 26.019±8.59 27.311±13.00 16.140±4.43 9.421±1.29 8.893±1.13 6.792±2.44 13.824±1.41 7.843±2.47 3.901±1.56 23.783±9.48 8.714±1.15 24.908±9.67 9.361±3.17 7.249±3.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000499 CIL_000499_0002 CGP 7:109798676-109960470
CIL_0009CP CIL_0009CP_0002 VISTA 7:109862809-110466321
CIL_0001HO CIL_0001HO_0003 CGP 7:109893780-109986929

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0016020 IBA membrane
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0017137 IDA Rab GTPase binding
GO:0032851 ISS positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000060545 dennd5a-201 protein_coding Danio_rerio 0 1825
ENST00000328194 DENND5A-001 protein_coding Homo_sapiens 0 5963
ENST00000524446 DENND5A-011 protein_coding Homo_sapiens 0 669
ENST00000526523 DENND5A-010 processed_transcript Homo_sapiens 6e-33 145
ENST00000526707 DENND5A-002 nonsense_mediated_decay Homo_sapiens 0 3072
ENST00000527700 DENND5A-004 retained_intron Homo_sapiens 0 2715
ENST00000527896 DENND5A-009 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000528725 DENND5A-016 protein_coding Homo_sapiens 0 747
ENST00000529977 DENND5A-005 retained_intron Homo_sapiens 0 1177
ENST00000530044 DENND5A-003 protein_coding Homo_sapiens 0 4955
ENST00000530780 DENND5A-006 nonsense_mediated_decay Homo_sapiens 0 507
ENST00000530867 DENND5A-008 retained_intron Homo_sapiens 0 449
ENST00000531580 DENND5A-012 retained_intron Homo_sapiens 0 418
ENST00000531747 DENND5A-013 nonsense_mediated_decay Homo_sapiens 0 1059
ENST00000532696 DENND5A-007 retained_intron Homo_sapiens 0 996
ENST00000533737 DENND5A-015 protein_coding Homo_sapiens 0 451

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