C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sigma non-opioid intracellular receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059354 Sigmar1-001 ENSMUSG00000036078 10090 - 4:41738493-41741359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059354
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059354 74.839±20.47 49.052±10.11 34.564±2.53 17.290±1.69 59.426±7.13 63.563±2.21 15.332±1.91 30.764±3.74 84.092±51.32 34.137±4.11 4.944±0.32 49.244±19.23 14.315±2.46 7.013±3.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SN CIL_0005SN_0002 CGP 4:41723836-41756157
CIL_0004KU CIL_0004KU_0002 CGP 4:41738493-41758695

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IDA receptor activity
GO:0004985 IEA opioid receptor activity
GO:0005515 IPI protein binding
GO:0005635 IEA nuclear envelope
GO:0005783 IEA endoplasmic reticulum
GO:0005811 IEA lipid particle
GO:0005886 IEA plasma membrane
GO:0006869 IEA lipid transport
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0038003 IEA opioid receptor signaling pathway
GO:0042995 IEA cell projection
GO:0043523 ISS regulation of neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277010 SIGMAR1-001 protein_coding Homo_sapiens 0 1002
ENST00000353468 SIGMAR1-003 nonsense_mediated_decay Homo_sapiens 0 649
ENST00000378892 SIGMAR1-002 protein_coding Homo_sapiens 0 920

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