C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ domain containing RING finger 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036218 Pdzrn4 10090 + 15:92396915-92771819 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035399 Pdzrn4-201 92597109-92771819 protein_coding
  ENSMUST00000169942 Pdzrn4-202 92396915-92771819 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035399ENSMUST00000169942
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035399 0.180±0.10 0.028±0.00 0.065±0.05 4.336±3.34 0.045±0.01 N/A N/A 0.175±0.03 0.011±0.01 N/A 0.122±0.07 0.499±0.44 0.012±0.01 0.365±0.10
ENSMUST00000169942 N/A 0.041±0.02 0.054±0.01 1.361±0.00 N/A 0.126±0.06 0.494±0.11 0.051±0.01 0.011±0.01 0.096±0.02 N/A 1.207±0.97 0.018±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0003 CGP 15:92051165-92771819
CIL_0009BF CIL_0009BF_0002 VISTA 15:92214399-92815071
CIL_0003DL CIL_0003DL_0003 CGP 15:92396915-93275161

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045687 pdzrn4 PDZ domain containing ring finger 4 protein_coding Danio_rerio
ENSDARG00000086878 PDZRN4 (2 of 2) PDZ domain containing ring finger 4 protein_coding Danio_rerio
ENSG00000165966 PDZRN4 PDZ domain containing ring finger 4 protein_coding Homo_sapiens

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