C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing RING finger 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169942 Pdzrn4-202 ENSMUSG00000036218 10090 + 15:92396915-92771819 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000169942
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000169942 0.041±0.02 0.054±0.01 1.361±0.00 0.126±0.06 0.494±0.11 0.051±0.01 0.011±0.01 0.096±0.02 1.207±0.97 0.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0003 CGP 15:92051165-92771819
CIL_0009BF CIL_0009BF_0002 VISTA 15:92214399-92815071
CIL_0003DL CIL_0003DL_0003 CGP 15:92396915-93275161

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263666 PDZRN3-001 protein_coding Homo_sapiens 0 385
ENST00000298919 PDZRN4-003 protein_coding Homo_sapiens 0 2619
ENST00000402685 PDZRN4-001 protein_coding Homo_sapiens 0 2732
ENST00000462146 PDZRN3-005 protein_coding Homo_sapiens 0 385
ENST00000466780 PDZRN3-004 protein_coding Homo_sapiens 0 385
ENST00000479530 PDZRN3-006 protein_coding Homo_sapiens 0 385
ENST00000494559 PDZRN3-007 protein_coding Homo_sapiens 0 329
ENST00000539469 PDZRN4-002 protein_coding Homo_sapiens 0 2601
ENST00000548316 PDZRN4-004 retained_intron Homo_sapiens 0 2359

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