C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing RING finger 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035399 Pdzrn4-201 ENSMUSG00000036218 10090 + 15:92597109-92771819 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000035399
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000035399 0.180±0.10 0.028±0.00 0.065±0.05 4.336±3.34 0.045±0.01 0.175±0.03 0.011±0.01 0.122±0.07 0.499±0.44 0.012±0.01 0.365±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0003 CGP 15:92051165-92771819
CIL_0009BF CIL_0009BF_0002 VISTA 15:92214399-92815071
CIL_0003DL CIL_0003DL_0003 CGP 15:92396915-93275161

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263666 PDZRN3-001 protein_coding Homo_sapiens 0 385
ENST00000298919 PDZRN4-003 protein_coding Homo_sapiens 0 2619
ENST00000402685 PDZRN4-001 protein_coding Homo_sapiens 0 2481
ENST00000462146 PDZRN3-005 protein_coding Homo_sapiens 0 385
ENST00000466780 PDZRN3-004 protein_coding Homo_sapiens 0 385
ENST00000479530 PDZRN3-006 protein_coding Homo_sapiens 0 385
ENST00000494559 PDZRN3-007 protein_coding Homo_sapiens 0 329
ENST00000539469 PDZRN4-002 protein_coding Homo_sapiens 0 2861
ENST00000548316 PDZRN4-004 retained_intron Homo_sapiens 0 2359

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